Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq95 140 2e-28 >seq95 Length=111136 Score = 140 bits (154), Expect = 2e-28 Identities = 213/301 (71%), Gaps = 8/301 (3%) Strand=Plus/Minus Query 27327 TACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGG 27386 |||||| ||||| | | |||| || ||||| || |||||||| | ||| || Sbjct 30474 TACGTAGAACTGGGCGAAGACGTGACAGGGAGGCAGGGCCATGAGATGTAGATCTCGGGC 30415 Query 27387 GTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTC---CAC 27443 ||||||||||| || ||||||||||||||| | || |||||| |||| ||| ||| Sbjct 30414 GTTCCAGGCGCTCATGATGATGCGCCTGTCGTACGGCTTGTTCTTGATCTTGTCTATCAC 30355 Query 27444 GGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACT 27502 | || || ||||| || || ||| | || |||||||| || | ||| |||| | Sbjct 30354 GTCG----GCGAGCTGGTCGACTCCCTTGCCGGAGTAGTCGGCCTTGGCGTCGATGTATT 30299 Query 27503 CTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGT 27562 |||| || || || | ||| ||||| |||||||| || |||||||| || | || | || Sbjct 30298 CTGCGCCAAAGTGGCGCCACTGGAAGCCGTACACGGGACCCAGGTCGCCTACCTCGCGGT 30239 Query 27563 GCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCC 27622 || || |||| |||| | ||| || | || |||||| | ||||| ||||| || | Sbjct 30238 GCGTGAGGCCCAGGCTGTCGAGAAACTCGCGCGATCCGTTGCCATCCCATATCTTGACGC 30179 Query 27623 C 27623 | Sbjct 30178 C 30178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369504101682128