Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq60 113 6e-20 >seq60 Length=156840 Score = 113 bits (124), Expect = 6e-20 Identities = 201/293 (69%), Gaps = 3/293 (1%) Strand=Plus/Plus Query 48402 TCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCC 48461 || || | ||| || || ||||| ||| || |||| ||||| || || || || Sbjct 140316 TCCTTGATGTAGGTGTCGATTAAGAGAGAGTATGTTTCCGAGTGGATGTTCTCCATCATG 140375 Query 48462 ATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCA 48521 ||||| ||||||||||| || | || || | || || || || | || || ||| Sbjct 140376 ATCTGGAATCCGTAAAAGCAACGAGCCTCAGGGACTTGGACTTCACCGCTGAAGCGCTCA 140435 Query 48522 GCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATA 48581 |||| ||||| || || || || || ||||||||||||||| | || || || Sbjct 140436 ACCAAGTTCTCGTTGACGATGCCGTCGGAAGCAGCAAAAAATGCCAGTATGTGGGAGATG 140495 Query 48582 AAATATTTTTCGTTGGAAGTCA---GTTTATTCCAGTCATTGATATCTTTTGATATATCT 48638 || ||||| |||| | ||| | || |||||||| | | ||||||||| | ||| Sbjct 140496 AAGTATTTCTCGTCATCATTCAGACGATTGTTCCAGTCGTGCAAATCTTTTGACAGATCG 140555 Query 48639 ACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 | ||||| || ||||| || || ||||| || ||||| ||||| | ||| || Sbjct 140556 ATCTCTTCGGCCGTCCAGAAGGAAGCCTCGGCCTTTTTGTACATTTGCCAGAT 140608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694662825848320