Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq303 118 2e-21 seq245 98.7 2e-15 >seq303 Length=27345 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| ||||||||||| || ||||| || ||||||||||||||||| | || | ||||| Sbjct 11477 GAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAATCGGCGAGCGTACGGCCATC 11418 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || || ||||| || || | ||||||||| | | ||| |||||||| || Sbjct 11417 TTCCAGCTGCTTACCAGCGAAAATCAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTATC 11358 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 |||||| || ||| || | || | | | || ||| ||| || || || || || || Sbjct 11357 TTGAATCTTGGTTTTCACGTTGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATGGT 11298 Query 152072 TTTGCCCGTGAGAGTCTTCACGA 152094 || || || | |||||| |||| Sbjct 11297 CTTTCCGGTCAAAGTCTTGACGA 11275 Score = 114 bits (126), Expect = 3e-20 Identities = 150/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--G 151958 ||| | ||| ||||| || ||||||||||| || || | || | ||||| || || | Sbjct 11696 ATGCAAAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGTGTCCGGCCATCCTCGAGCTG 11637 Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018 |||| || ||||||||||| | |||||| || | | || |||||||| |||||||| Sbjct 11636 CTTT--CCAGCGAAGATAAGACGCTGCTGATCGGGAGGAATGCCTTCCTTATCTTGAATC 11579 Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078 || ||| ||| | |||| |||| || ||| || || || || || || || || Sbjct 11578 TTCGTTTTCACATTGTCTATAGTGTCAGACGACTCCACCTCGAGGGTGATGGTCTTTCCT 11519 Query 152079 GTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| ||||||| |||||| Sbjct 11518 GTGAGGGTCTTGACGAAGATCTGCAT 11493 Score = 109 bits (120), Expect = 1e-18 Identities = 158/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| |||||||||||||||||||| || || |||||||| || || | || | Sbjct 11194 GAGGCGGAGCACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCGAGGGTGCG 11135 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || || || ||||| || || ||||| || | ||| || || | | ||| || Sbjct 11134 GCCGTCCTCAAGCTGCTTT--CCAGCAAAGATCAGACGCTGTTGATCGGGGGGGATCCCC 11077 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || ||||| || |||||| | || | | |||| || ||| || |||||| Sbjct 11076 TCCTTGTCCTGAATCTTGGTCTTGACATTGTCGATGGTGTCAGATGACTCGACCTCAAGA 11017 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| || || || || ||||| | ||||| Sbjct 11016 GTGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATTTGCAT 10976 >seq245 Length=42083 Score = 98.7 bits (108), Expect = 2e-15 Identities = 151/214 (71%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||| || ||||||||||| ||||| | || | ||||| || | Sbjct 31859 CAAG-TGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCGA 31801 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || ||||| || | ||||||||||| | || || ||||| || || | Sbjct 31800 GCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGA 31741 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| | || | | |||| ||| ||| || || || || || || || | Sbjct 31740 TCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTCC 31681 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110 ||||||| ||||| ||||| | |||||| || || Sbjct 31680 CCGTGAGGGTCTTGACGAAAATCTGCATCTTGCC 31647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153810629069648