Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20hypoxylon_20[genbank_20GCA_5F000729835.1_202014-07- 15] 688 sequences; 35,593,152 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq303 167 6e-36 seq245 159 8e-34 seq1 114 3e-20 >seq303 Length=27345 Score = 167 bits (184), Expect = 6e-36 Identities = 157/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || ||| | || ||||| || ||||||||||||||||| || || ||||||| Sbjct 11275 TCGTCAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTGGAGTCTTCTGATACCATCG 11334 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | ||||| ||| |||||||| || || ||||| |||||||| |||||||| || || | Sbjct 11335 ACAACGTGAAAACCAAGATTCAAGATAAGGAAGGCATCCCTCCCGACCAGCAGCGTCTGA 11394 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 | ||||| || || ||||| |||||||| | || || |||||||| ||| |||| || | Sbjct 11395 TTTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACGCTCGCCGATTACAACATCCAGAAGG 11454 Query 178111 AATCAACACTGCATCTTGTT 178130 | || ||||| ||||||||| Sbjct 11455 AGTCCACACTTCATCTTGTT 11474 Score = 167 bits (184), Expect = 6e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||||||||| || ||||||||||||||||| || ||| Sbjct 11496 CAGATCTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTCGAGGTGGAGTCGTCTGAC 11555 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| |||||||| || || ||||| || ||||| || ||||| Sbjct 11556 ACTATAGACAATGTGAAAACGAAGATTCAAGATAAGGAAGGCATTCCTCCCGATCAGCAG 11615 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| ||||| |||||||| ||||| |||| ||||| || || ||| || Sbjct 11616 CGTCTTATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGGACACTTGCAGACTACAACATC 11675 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || || ||||| ||||| | || ||| Sbjct 11676 CAGAAGGAGTCAACTTTGCATTTGGTGTTG 11705 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| || || || || || ||||| || ||||| || || ||| Sbjct 10979 CAAATTTTCGTCAAAACCCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCATCTGAC 11038 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| |||||||||||||| || || ||||| || || || || Sbjct 11039 ACCATCGACAATGTCAAGACCAAGATTCAGGACAAGGAGGGGATCCCCCCCGATCAACAG 11098 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || ||||| ||||| || || || | || || || || || ||| | Sbjct 11099 CGTCTGATCTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCGCAGACTACAACATT 11158 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || |||||||| Sbjct 11159 CAGAAGGAGTCTACTCTTCATCTTGT 11184 >seq245 Length=42083 Score = 159 bits (176), Expect = 8e-34 Identities = 148/188 (79%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || |||||||||||||||||||| || ||| Sbjct 31656 CAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTCGAGGTGGAGTCTTCCGAC 31715 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || || || ||||||||||| Sbjct 31716 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 31775 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| || || || |||||||| ||||| | || || ||||| || ||| || Sbjct 31776 CGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCCGACTACAACATC 31835 Query 178104 CAAAAAGA 178111 || || || Sbjct 31836 CAGAAGGA 31843 >seq1 Length=703770 Score = 114 bits (126), Expect = 3e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 177926 AATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACAC 177985 || ||| ||||| || || || || || || |||||| | ||||| || ||| ||||| Sbjct 263373 AAGTTTTGTGAAGACCCTGACGGGTAAGACCATCACCTTGGAGGTCGAGTCCTCGGACAC 263432 Query 177986 CATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACG 178045 ||||| || |||||| ||||||||||| || || || ||||| || |||||||| || Sbjct 263433 GATCGACAATGTCAAATCCAAGATTCAGGATAAGGAGGGCATCCCCCCTGACCAGCAGCG 263492 Query 178046 ACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCA 178105 | | ||||| || || || ||||| || ||||| | || || || || || || |||| Sbjct 263493 ATTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTGGCAGACTACAATATCCA 263552 Query 178106 AAA 178108 || Sbjct 263553 GAA 263555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203720589109472