Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq96 129 1e-24 >seq96 Length=87723 Score = 129 bits (142), Expect = 1e-24 Identities = 188/266 (71%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 230372 AGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACG 230431 ||| | || |||| || |||||||| || || | ||| || ||||| | ||| | Sbjct 52231 AGATGATCCAACAGATTATTACAGATGCTGTCACCATCGAGAAAGAGTTTCTGACTGAGG 52172 Query 230432 CTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCG 230491 || | |||||| || |||||||||| || | | ||| ||||||||| || || | Sbjct 52171 CTTTGCCATGTGCTCTACTTGGCATGAATGCCACATTGATGAAACAGTACATTGAGTTTG 52112 Query 230492 TAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCT 230551 ||||||| ||| | ||||||| |||||| | ||||| |||||||| | || || | Sbjct 52111 TAGCCGATCGCCTGCTTGTTGCTCTTGGTAATGAGAAGGTGTACAAGACGGCTAATCCTT 52052 Query 230552 TTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCA 230611 ||| || |||||| ||| || | || ||||| ||||||||||| || || || Sbjct 52051 TTGACTTCATGGAGAACATCTCATTGGGTGGCAAGACAAACTTCTTCGAGAAACGAGTGG 51992 Query 230612 GTGACTATCAGAGGCCTGGTGTGATG 230637 |||| || |||| | ||||||| ||| Sbjct 51991 GTGAGTACCAGAAGGCTGGTGTCATG 51966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057788354636900