Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq96 123 3e-23 >seq96 Length=87723 Score = 123 bits (136), Expect = 3e-23 Identities = 183/259 (71%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 16500 TTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTA 16559 |||| ||||| || ||||| || ||||| ||||| || ||||| |||||||| | | Sbjct 52625 TTTCCGAGTGGATATTCTCCATCATGATCTGGAATCCGTAAAAGCAACGAGCCTCAGGGA 52684 Query 16560 TTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAG 16619 ||| ||||| || || || || ||| |||||| || || || |||||| |||| Sbjct 52685 CTTGGACTTCGCCGCTGAAGCGCTCAACCAAGTTCTCGTTGACAATGCCGTCAGAGGCAG 52744 Query 16620 CAAAAAACGCCAATATGTGCTTAATGAAATATTT---TTCGTCAGATGTAAGAATATGCC 16676 |||| || |||| ||||| ||||||||||| |||||| | || | | || Sbjct 52745 CAAAGAATGCCAGAATGTGGGAGATGAAATATTTCTCATCGTCATTCAGACGATTGTTCC 52804 Query 16677 AATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736 | || | |||||||| || | ||| | ||||| | |||||| || |||| | |||| Sbjct 52805 AGTCGTGCAAATCTTTCGACAGATCGATCTCTTCGGCCGTCCAGAAAGAAGCCTCGGCCT 52864 Query 16737 TTTTATACATTTTCCAAAT 16755 |||| ||||||| ||| || Sbjct 52865 TTTTGTACATTTGCCAGAT 52883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511397587251600