Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq5 179 4e-40
seq96 145 9e-30
>seq5
Length=693879
Score = 179 bits (198), Expect = 4e-40
Identities = 458/690 (66%), Gaps = 14/690 (2%)
Strand=Plus/Plus
Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040
|| || ||||| | || ||||||| | ||| || |||| | || || || |||||
Sbjct 203506 CCGGGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGTTCTTCTCGACGCGCTTCATG 203565
Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100
|| ||||| |||||||||||||| | |||| ||| | | | ||| || || ||
Sbjct 203566 AAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGCACGGACTTCTTCCTTGCCG 203625
Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160
||||||| | ||| |||||| | | | ||| | ||||| || |||||||| |||
Sbjct 203626 TGATTCTTTCGCAAATCAAGGAACTCAAACACATCGGCGTGCCAAGGCTCCAAGTAAATG 203685
Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220
| | | | ||||| || ||||| || ||||| || | ||||| || ||||| || ||
Sbjct 203686 GCAAAAGCGCCAGGTCGCTTGTTGCCACCCTGGTCGACATATCTGGCCGTGTTGTTGAAA 203745
Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280
|| | | ||| ||||| | ||||||||| | || ||||| |||| || ||| |||
Sbjct 203746 ACACGAAGCATGGGAATGACACCATTGGACGTCCCGTTGGTGCCGGCAATGTAGGAGCCA 203805
Query 54281 CTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338
|||| ||||| | ||| | || || || || || ||||| || ||||| | |
Sbjct 203806 GTGGCGCGAATGCGGTGGACATTCA-AG-CCGATACCACCAGCCATCTTGGAGATCATGG 203863
Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398
|||| || | ||| |||||||||||||| || || || ||| |||||| | || |
Sbjct 203864 CGCAGGTCTTGAGCGTGTCATAGATGCCCTCGATGCTGTCCTCCTTCATGTCGACGAGGA 203923
Query 54399 AACAGCTAGACATTTGGTGAC---GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 54455
||| |||| | |||| || || || || || |||| || || || ||||
Sbjct 203924 ---AGCAAGACGACAGCTGACATTGAGGTGTGCCAGCGTTGAATAGTGTGGGTGAGGCGT 203980
Query 54456 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATT 54515
| || || ||| || | |||| ||| || || | || || |||| |
Sbjct 203981 GTGTGAAGAGTTTGCTGGACATGAGATGGTAGGTTTCCAGGACTCGCTCAATATTGTCTC 204040
Query 54516 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 54575
|| || || ||||||||||| | ||||||||| |||| || || |||||| ||
Sbjct 204041 CCCAGATCCCGACAGCGACACGCATAATCATGTGCTGGGGTCGCTCGACAATCTTGCCGT 204100
Query 54576 TTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAA 54633
| | || || | || || |||||||| || || ||||| || | || |||||
Sbjct 204101 TGAGCTTGAGAAGATATGACCGCTCCAAAGTCTTGAAGCCAAAGTACTGATAGTTGAAA- 204159
Query 54634 GTCTCGTTCGTAAATAATAACTGAGTTGAG 54663
|||| || || | ||| | |||| |||
Sbjct 204160 -TCTCTGTCATAGACAATGGCGGAGTCGAG 204188
>seq96
Length=87723
Score = 145 bits (160), Expect = 9e-30
Identities = 300/442 (68%), Gaps = 12/442 (3%)
Strand=Plus/Plus
Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903
|| ||||| |||||||| ||||| ||||| || || || || || | ||||| || ||
Sbjct 51979 TTCTGGTACTCACCCACTCGTTTCTCGAAGAAGTTTGTCTTGCCACCCAATGAGATGTTC 52038
Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATT-CAGAAAT 23962
|||||||| || | ||||| | || || | ||| | | | |||| || ||
Sbjct 52039 TCCATGAAGTCAAAAGGATTAGCCGTCTTGTACAC-CTTCTCATTACCAAGAGCAACAAG 52097
Query 23963 CAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 24022
|| | ||| || |||||||| || || |||||||| | |||||| || | ||
Sbjct 52098 CAGGCGATCGGCTACAAACTCAATGTACTGTTTCATCAATGTGGCATTCATGCCAAGTAG 52157
Query 24023 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 24082
| ||| | |||| |||| ||||| |||| || || | ||| || ||||| |||||
Sbjct 52158 AGCACATGGCAAAGCCTCAGTCAGAAACTCTTTCTCGATGGTGACAGCATCTGTAATAAT 52217
Query 24083 A-----GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACAT 24137
|||| | ||| || | ||||||| | | | | || || ||| ||
Sbjct 52218 CTGTTGGATCAT-CTGCTTGCTGGCTCGGTGCTTCAAGTGAGAGTG----CAGCAAGCAG 52272
Query 24138 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 24197
|| || || ||| |||||||| || | |||||||||||||| || ||||| |||
Sbjct 52273 GCAAAGTCTGTGTGCAGACCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACCG 52332
Query 24198 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATT 24257
||||| | ||||||||| || ||||| || || || ||||| | || ||||||||
Sbjct 52333 GGCATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCTGAAGAAAATA 52392
Query 24258 CCTTCTACTGCCGCAAAGGCAA 24279
||||| || || ||||| ||||
Sbjct 52393 CCTTCCACGGCAGCAAAAGCAA 52414
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593702081402400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |