Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5 179 4e-40 seq96 145 9e-30 >seq5 Length=693879 Score = 179 bits (198), Expect = 4e-40 Identities = 458/690 (66%), Gaps = 14/690 (2%) Strand=Plus/Plus Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 || || ||||| | || ||||||| | ||| || |||| | || || || ||||| Sbjct 203506 CCGGGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGTTCTTCTCGACGCGCTTCATG 203565 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 || ||||| |||||||||||||| | |||| ||| | | | ||| || || || Sbjct 203566 AAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGCACGGACTTCTTCCTTGCCG 203625 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 ||||||| | ||| |||||| | | | ||| | ||||| || |||||||| ||| Sbjct 203626 TGATTCTTTCGCAAATCAAGGAACTCAAACACATCGGCGTGCCAAGGCTCCAAGTAAATG 203685 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | | | ||||| || ||||| || ||||| || | ||||| || ||||| || || Sbjct 203686 GCAAAAGCGCCAGGTCGCTTGTTGCCACCCTGGTCGACATATCTGGCCGTGTTGTTGAAA 203745 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 || | | ||| ||||| | ||||||||| | || ||||| |||| || ||| ||| Sbjct 203746 ACACGAAGCATGGGAATGACACCATTGGACGTCCCGTTGGTGCCGGCAATGTAGGAGCCA 203805 Query 54281 CTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338 |||| ||||| | ||| | || || || || || ||||| || ||||| | | Sbjct 203806 GTGGCGCGAATGCGGTGGACATTCA-AG-CCGATACCACCAGCCATCTTGGAGATCATGG 203863 Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398 |||| || | ||| |||||||||||||| || || || ||| |||||| | || | Sbjct 203864 CGCAGGTCTTGAGCGTGTCATAGATGCCCTCGATGCTGTCCTCCTTCATGTCGACGAGGA 203923 Query 54399 AACAGCTAGACATTTGGTGAC---GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 54455 ||| |||| | |||| || || || || || |||| || || || |||| Sbjct 203924 ---AGCAAGACGACAGCTGACATTGAGGTGTGCCAGCGTTGAATAGTGTGGGTGAGGCGT 203980 Query 54456 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATT 54515 | || || ||| || | |||| ||| || || | || || |||| | Sbjct 203981 GTGTGAAGAGTTTGCTGGACATGAGATGGTAGGTTTCCAGGACTCGCTCAATATTGTCTC 204040 Query 54516 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 54575 || || || ||||||||||| | ||||||||| |||| || || |||||| || Sbjct 204041 CCCAGATCCCGACAGCGACACGCATAATCATGTGCTGGGGTCGCTCGACAATCTTGCCGT 204100 Query 54576 TTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAA 54633 | | || || | || || |||||||| || || ||||| || | || ||||| Sbjct 204101 TGAGCTTGAGAAGATATGACCGCTCCAAAGTCTTGAAGCCAAAGTACTGATAGTTGAAA- 204159 Query 54634 GTCTCGTTCGTAAATAATAACTGAGTTGAG 54663 |||| || || | ||| | |||| ||| Sbjct 204160 -TCTCTGTCATAGACAATGGCGGAGTCGAG 204188 >seq96 Length=87723 Score = 145 bits (160), Expect = 9e-30 Identities = 300/442 (68%), Gaps = 12/442 (3%) Strand=Plus/Plus Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 || ||||| |||||||| ||||| ||||| || || || || || | ||||| || || Sbjct 51979 TTCTGGTACTCACCCACTCGTTTCTCGAAGAAGTTTGTCTTGCCACCCAATGAGATGTTC 52038 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATT-CAGAAAT 23962 |||||||| || | ||||| | || || | ||| | | | |||| || || Sbjct 52039 TCCATGAAGTCAAAAGGATTAGCCGTCTTGTACAC-CTTCTCATTACCAAGAGCAACAAG 52097 Query 23963 CAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 24022 || | ||| || |||||||| || || |||||||| | |||||| || | || Sbjct 52098 CAGGCGATCGGCTACAAACTCAATGTACTGTTTCATCAATGTGGCATTCATGCCAAGTAG 52157 Query 24023 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 24082 | ||| | |||| |||| ||||| |||| || || | ||| || ||||| ||||| Sbjct 52158 AGCACATGGCAAAGCCTCAGTCAGAAACTCTTTCTCGATGGTGACAGCATCTGTAATAAT 52217 Query 24083 A-----GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACAT 24137 |||| | ||| || | ||||||| | | | | || || ||| || Sbjct 52218 CTGTTGGATCAT-CTGCTTGCTGGCTCGGTGCTTCAAGTGAGAGTG----CAGCAAGCAG 52272 Query 24138 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 24197 || || || ||| |||||||| || | |||||||||||||| || ||||| ||| Sbjct 52273 GCAAAGTCTGTGTGCAGACCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACCG 52332 Query 24198 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATT 24257 ||||| | ||||||||| || ||||| || || || ||||| | || |||||||| Sbjct 52333 GGCATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCTGAAGAAAATA 52392 Query 24258 CCTTCTACTGCCGCAAAGGCAA 24279 ||||| || || ||||| |||| Sbjct 52393 CCTTCCACGGCAGCAAAAGCAA 52414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593702081402400