Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq13 140 4e-28 seq20 122 1e-22 >seq13 Length=451911 Score = 140 bits (154), Expect = 4e-28 Identities = 164/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| |||||| |||| ||||||||||| || || ||||| || ||||| || || | Sbjct 17287 CGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA 17346 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| ||||| || ||||||||||||||||| | || | || ||||||| Sbjct 17347 TCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGGATGCCCTCCTTG 17406 Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| |||||| |||| ||| | | | |||||| || ||||| |||| ||||| Sbjct 17407 TCCTGGATTTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGAT 17465 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAtttt 43186 || || || || || ||||| || || || ||||| || Sbjct 17466 CGTCTTCCCTGTGAGGGTCTTGACGAAAATCTGCATCTT 17504 >seq20 Length=366416 Score = 122 bits (134), Expect = 1e-22 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025 |||||||||||||| ||||| || |||||| ||||| ||||| || || || ||||| Sbjct 156158 AAACGCAACACCAAGTGCAAGGTTGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTCCGT 156217 Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085 | || || ||||| || || ||||| || || ||||||||||||| || | || || Sbjct 156218 CCATCCTCAAGCTGTTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCTTCT 156277 Query 43086 TTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGT 43144 |||| | ||| | |||| | ||| | | | ||||| |||||||| || | || Sbjct 156278 TTGT-CTTGAATCTTTGACTTCACGTTGTCTATTGTGTCAGAAGATTCCACCTCAAGGGT 156336 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAt 43183 |||||| || || || || ||||| || ||||| ||||| Sbjct 156337 GATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 156375 Score = 84.2 bits (92), Expect = 3e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 42980 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 43039 ||| | |||| |||||| || || || ||||| || || || || |||| || | ||| Sbjct 156400 ATGAAGTGTGGACTCCTTCTGGATGTTATAATCGGCGAGCGTACGGCCGTCTTCCAACTG 156459 Query 43040 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 || |||||||| || || ||||||||||| | || | || ||||||| | ||| | | Sbjct 156460 TTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGT-CTTGAATCT 156518 Query 43100 TTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCG 43158 ||| ||||| | | | || || |||||||| |||| || ||||| || || | Sbjct 156519 TTGATTTGACATTGTCGATAGTATCAGAAGATTCCACCTCGAGGGTAATGGTCTTTCCGG 156578 Query 43159 TTAGCGTCTTTACAA 43173 | | ||||| |||| Sbjct 156579 TCAAAGTCTTGACAA 156593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571798801496400