Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq5 354 7e-93
seq20 129 5e-25
seq13 105 6e-18
seq96 98.7 9e-16
>seq5
Length=693879
Score = 354 bits (392), Expect = 7e-93
Identities = 649/948 (68%), Gaps = 2/948 (0%)
Strand=Plus/Plus
Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086
||||| | ||||| || || ||||| || || | |||||| |||||||| || ||
Sbjct 203236 GAGGCCAAGTTGCAAACAGCGACCTCATCAGGGGCAGAGTACTCGACAATTTCCGTGCAA 203295
Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146
|| ||| | || || ||||| || |||||||||| || | ||||| | ||||
Sbjct 203296 AGGTTGGAGCTGCGGATTGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCC 203355
Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206
|||||||||||| | || | |||||||| ||| | ||| | ||| | ||| |
Sbjct 203356 TTGTAGAGCATGAAAGGATTACCCGTCTCTGTCTGGGCCTCCAGGATGGAGTACCAGAGC 203415
Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGC 23265
|||| || ||| |||||||| ||| ||| || ||| ||||||| || | ||
Sbjct 203416 TTCTGGGCACGAATG-GTCGCACGACCCTTGCCCTCACGCTCATACTTTTCATAGAGAGC 203474
Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACT 23325
||||| || | ||||| ||||| ||||||||||| ||| | || ||||| ||| |
Sbjct 203475 CTCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCATTCGTTGGGGCACATCAGAGT 203534
Query 23326 CCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAA 23385
||| || || || ||||| |||| |||||||| || ||||| ||||| |||
Sbjct 203535 CCAATCACCGTTCTTCTCGACGCGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAA 203594
Query 23386 CAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAA 23445
| || || || || || || || |||||| |||||| |||||| | || || ||
Sbjct 203595 TAAATCACGAGCACGGACTTCTTCCTTGCCGTGATTCTTTCGCAAATCAAGGAACTCAAA 203654
Query 23446 CACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCC 23505
||| || || ||||| ||||| | ||||| |||||| ||||| |||| ||| ||||| ||
Sbjct 203655 CACATCGGCGTGCCAAGGCTCCAAGTAAATGGCAAAAGCGCCAGGTCGCTTGTTGCCACC 203714
Query 23506 CTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565
||| ||||| || | ||||||||||||| | || | ||||| || | || ||| |||||
Sbjct 203715 CTGGTCGACATATCTGGCCGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTGGA 203774
Query 23566 CGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACC 23625
|| ||| ||| || | || || | || |||| | ||| || | || ||
Sbjct 203775 CGTCCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCGCGAATGCGGTGGACATTCAAGCC 203834
Query 23626 TATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTC 23685
|| || || || || || ||||| ||||| || || ||||| |||||||||||
Sbjct 203835 GATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTC 203894
Query 23686 GATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGC 23745
|||||||||||| || | |||| | ||| || || |||| || || || || |
Sbjct 203895 GATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGACGACAGCTGACATTGAGGTGTGCC 203954
Query 23746 GGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGT 23805
|| ||| ||||| || |||||| || ||| | | ||||| |||| ||| ||
Sbjct 203955 AGCGTTGAATAGTGTGGGTGAGGCGTGTGTGAAGAGTTTGCTGGACATGAGATGGTAGGT 204014
Query 23806 GTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTA 23865
|| | | | ||||| | ||||| || |||| ||||| ||||| |||||||
Sbjct 204015 TTCCAGGACTCGCTCAATATTGTCTCCCCAGATCCCGACAGCGACACGCATAATCATGTG 204074
Query 23866 TTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTT 23925
|| |||| |||||| | |||||| | |||| |||||||| || | || || ||
Sbjct 204075 CTGGGGTCGCTCGACAATCTTGCCGTTGAGCTTGAGAAGATATGACCGCTCCAAAGTCTT 204134
Query 23926 AAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973
|| ||||| || | |||||| || || | || | || ||||| ||
Sbjct 204135 GAAGCCAAAGTACTGATAGTTGAAATCTCTGTCATAGACAATGGCGGA 204182
Score = 132 bits (146), Expect = 4e-26
Identities = 374/565 (66%), Gaps = 17/565 (3%)
Strand=Plus/Plus
Query 22108 GTCCACTGTAAACTGTATGGCGTTTGCGGCCG--GTTTG-GTGCGAAGATAATACATGCC 22164
|||||| || ||||| || | |||||| | | ||| ||||| | || ||||||||
Sbjct 202317 GTCCACGGTGAACTGGATAGG---TGCGGCAGCAGCTTGCGTGCGCAAGTAGTACATGCC 202373
Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224
|||||| || |||| ||||| || ||| || || || || | || || | | ||
Sbjct 202374 CGTCTTGAGGCCCAGTTTCCAGCCGGTAAAGTGCATGGAAGTGATCTTGCCCATAGTGGG 202433
Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284
| ||||| | || | ||||| ||| ||||| || || || || || || ||
Sbjct 202434 ATCCTTCATGTGAATGTTAAGAGACTGGGACTGGTCGATGAAAGCACCACGGTCAGCAGC 202493
Query 22285 CATATTTATCAA-TGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343
||| | | | ||| || || |||||||| || || ||||| || |||| |
Sbjct 202494 CATCTGCACGACGTGT-CGTTGAGAAATTTCCCAAACAGTTTTGTAGAGAGCTTTGATGT 202552
Query 22344 CTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403
| ||| || ||| |||| | ||| ||||| | | ||||| || || |
Sbjct 202553 CGGCCGGGATGTTGGGGATATTCTGAATGGAACCGTTCTCGGCAATGATACGGTTCTTCA 202612
Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTT 22463
| | ||| ||| | || ||| || | |||||| | ||| |||| || || |
Sbjct 202613 TAGCATCAGACCAAAGGCCCATGTCGACGAGATCTTTCAGCAGCCAGGGGTTGACAACCT 202672
Query 22464 GAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATT 22523
| || || || | || ||| |||||||||||||||||||| ||| | || ||||| | |
Sbjct 202673 GGAATTCACCTGCCAGGACACGGCGTTGGTAAATGTTGGACGTGTAAGGCTCGAAGCACT 202732
Query 22524 CATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGT 22583
||||||| || || ||||||| ||| ||||| || ||||| || || | ||| || ||||
Sbjct 202733 CATTGTTACCTAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGGGCGAGCAGCAGTGAGT 202792
Query 22584 TTCTCAAGCCGTGCT--TTGAAATTTTACT-CTTGAGCATCGACCAGTCCCACAGATCGG 22640
| | | || |||| |||| | | || ||| || | ||| ||||| || || |
Sbjct 202793 TGCGAATTCCATGCTCCTTGA---TCTGCTCCTTCAGACTATTCCACTCCCAGAGGTCAG 202849
Query 22641 ACGGCGTCACATTGTCCCACATATC 22665
| ||| |||| ||||||||| ||
Sbjct 202850 AAGGCTTCAC---GTCCCACATGTC 202871
>seq20
Length=366416
Score = 129 bits (142), Expect = 5e-25
Identities = 161/218 (74%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 31205 GTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAA 31264
|| |||||| |||| || || || || ||| |||| || ||| | || || | | ||||
Sbjct 156591 GTCAAGACTTTGACCGGAAAGACCATTACCCTCGAGGTGGAATCTTCTGATACTATCGAC 156532
Query 31265 ACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAAT 31323
| |||||| || ||| | | ||||||||||| | || || |||||||||||||| ||
Sbjct 156531 AATGTCAAATCAAAGATTCAAG-ACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTGAT 156473
Query 31324 ATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGA 31383
|||||||||||||||||||||||| || | |||||||||||| || || ||
Sbjct 156472 TTTCGCTGGCAAACAGTTGGAAGACGGCCGTACGCTCGCCGATTATAACATCCAGAAGGA 156413
Query 31384 ATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| || |||||||| || || | || | |||||||
Sbjct 156412 GTCCACACTTCATCTTGTTCTCCGCCTCCGTGGCGGTA 156375
Score = 86.0 bits (94), Expect = 6e-12
Identities = 116/160 (73%), Gaps = 10/160 (6%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| || ||||| || || |||||| | || || ||| | ||
Sbjct 156375 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTTGAGGTGGAATCTTCT 156316
Query 31253 GACAGTGTCGA-AACG----GTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
|||| | || |||| |||||| | || ||||| |||||| | || ||||
Sbjct 156315 GACACAATAGACAACGTGAAGTCAAAGATTCAA-----GACAAAGAAGGCATTCCTCCCG 156261
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
||||||||||||| || ||||| || |||||| | || ||
Sbjct 156260 ACCAGCAGCGTCTTATCTTCGCCGGGAAACAGCTTGAGGA 156221
>seq13
Length=451911
Score = 105 bits (116), Expect = 6e-18
Identities = 118/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||||| ||||| || ||||| || ||||||||| |||| || || |
Sbjct 17504 AAGATGCAGATTTTCGTCAAGACCCTCACAGGGAAGACGATCACCCTCGAGGTGGAGTCT 17445
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
||||||| |||| | ||||| | ||| ||||||||| ||| | || || |||
Sbjct 17444 TCCGACACCATCGACAACGTCAAGTCCAAAATCCAGGACAAGGAGGGCATCCCCCCAGAC 17385
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
|||||||| || || || |||||||| ||| | || ||
Sbjct 17384 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGA 17347
>seq96
Length=87723
Score = 98.7 bits (108), Expect = 9e-16
Identities = 198/293 (68%), Gaps = 3/293 (1%)
Strand=Plus/Minus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|| ||| | |||||||||||||| || || || || ||||| | |||||| | || |||
Sbjct 52883 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCTTTCTGGACGGCCGAAGAGATCGATCTG 52824
Query 57630 TCTAAGGATCTGAGCGATTGG---GATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686
|| || ||| || ||| ||| || || || || ||||| | |||| ||
Sbjct 52823 TCGAAAGATTTGCACGACTGGAACAATCGTCTGAATGACGATGAGAAATATTTCATCTCC 52764
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
||| | |||| || || || || || || || ||||| |||||||| ||||| || |
Sbjct 52763 CACATTCTGGCATTCTTTGCTGCCTCTGACGGCATTGTCAACGAGAACTTGGTTGAGCGC 52704
Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806
|| ||||| ||||| | ||||| | |||||||||||||| || | ||
Sbjct 52703 TTCAGCGGCGAAGTCCAAGTCCCTGAGGCTCGTTGCTTTTACGGATTCCAGATCATGATG 52644
Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859
|| || | || || |||| || || || | ||||| || ||| | |||||
Sbjct 52643 GAGAATATCCACTCGGAAACATACTCTCTCTTAATCGACACCTACATCAAGGA 52591
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445751745429600
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