Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq5 354 7e-93 seq20 129 5e-25 seq13 105 6e-18 seq96 98.7 9e-16 >seq5 Length=693879 Score = 354 bits (392), Expect = 7e-93 Identities = 649/948 (68%), Gaps = 2/948 (0%) Strand=Plus/Plus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 ||||| | ||||| || || ||||| || || | |||||| |||||||| || || Sbjct 203236 GAGGCCAAGTTGCAAACAGCGACCTCATCAGGGGCAGAGTACTCGACAATTTCCGTGCAA 203295 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146 || ||| | || || ||||| || |||||||||| || | ||||| | |||| Sbjct 203296 AGGTTGGAGCTGCGGATTGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCC 203355 Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206 |||||||||||| | || | |||||||| ||| | ||| | ||| | ||| | Sbjct 203356 TTGTAGAGCATGAAAGGATTACCCGTCTCTGTCTGGGCCTCCAGGATGGAGTACCAGAGC 203415 Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGC 23265 |||| || ||| |||||||| ||| ||| || ||| ||||||| || | || Sbjct 203416 TTCTGGGCACGAATG-GTCGCACGACCCTTGCCCTCACGCTCATACTTTTCATAGAGAGC 203474 Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACT 23325 ||||| || | ||||| ||||| ||||||||||| ||| | || ||||| ||| | Sbjct 203475 CTCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCATTCGTTGGGGCACATCAGAGT 203534 Query 23326 CCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAA 23385 ||| || || || ||||| |||| |||||||| || ||||| ||||| ||| Sbjct 203535 CCAATCACCGTTCTTCTCGACGCGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAA 203594 Query 23386 CAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAA 23445 | || || || || || || || |||||| |||||| |||||| | || || || Sbjct 203595 TAAATCACGAGCACGGACTTCTTCCTTGCCGTGATTCTTTCGCAAATCAAGGAACTCAAA 203654 Query 23446 CACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCC 23505 ||| || || ||||| ||||| | ||||| |||||| ||||| |||| ||| ||||| || Sbjct 203655 CACATCGGCGTGCCAAGGCTCCAAGTAAATGGCAAAAGCGCCAGGTCGCTTGTTGCCACC 203714 Query 23506 CTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565 ||| ||||| || | ||||||||||||| | || | ||||| || | || ||| ||||| Sbjct 203715 CTGGTCGACATATCTGGCCGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTGGA 203774 Query 23566 CGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACC 23625 || ||| ||| || | || || | || |||| | ||| || | || || Sbjct 203775 CGTCCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCGCGAATGCGGTGGACATTCAAGCC 203834 Query 23626 TATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTC 23685 || || || || || || ||||| ||||| || || ||||| ||||||||||| Sbjct 203835 GATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTC 203894 Query 23686 GATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGC 23745 |||||||||||| || | |||| | ||| || || |||| || || || || | Sbjct 203895 GATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGACGACAGCTGACATTGAGGTGTGCC 203954 Query 23746 GGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGT 23805 || ||| ||||| || |||||| || ||| | | ||||| |||| ||| || Sbjct 203955 AGCGTTGAATAGTGTGGGTGAGGCGTGTGTGAAGAGTTTGCTGGACATGAGATGGTAGGT 204014 Query 23806 GTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTA 23865 || | | | ||||| | ||||| || |||| ||||| ||||| ||||||| Sbjct 204015 TTCCAGGACTCGCTCAATATTGTCTCCCCAGATCCCGACAGCGACACGCATAATCATGTG 204074 Query 23866 TTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTT 23925 || |||| |||||| | |||||| | |||| |||||||| || | || || || Sbjct 204075 CTGGGGTCGCTCGACAATCTTGCCGTTGAGCTTGAGAAGATATGACCGCTCCAAAGTCTT 204134 Query 23926 AAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 || ||||| || | |||||| || || | || | || ||||| || Sbjct 204135 GAAGCCAAAGTACTGATAGTTGAAATCTCTGTCATAGACAATGGCGGA 204182 Score = 132 bits (146), Expect = 4e-26 Identities = 374/565 (66%), Gaps = 17/565 (3%) Strand=Plus/Plus Query 22108 GTCCACTGTAAACTGTATGGCGTTTGCGGCCG--GTTTG-GTGCGAAGATAATACATGCC 22164 |||||| || ||||| || | |||||| | | ||| ||||| | || |||||||| Sbjct 202317 GTCCACGGTGAACTGGATAGG---TGCGGCAGCAGCTTGCGTGCGCAAGTAGTACATGCC 202373 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 |||||| || |||| ||||| || ||| || || || || | || || | | || Sbjct 202374 CGTCTTGAGGCCCAGTTTCCAGCCGGTAAAGTGCATGGAAGTGATCTTGCCCATAGTGGG 202433 Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 | ||||| | || | ||||| ||| ||||| || || || || || || || Sbjct 202434 ATCCTTCATGTGAATGTTAAGAGACTGGGACTGGTCGATGAAAGCACCACGGTCAGCAGC 202493 Query 22285 CATATTTATCAA-TGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343 ||| | | | ||| || || |||||||| || || ||||| || |||| | Sbjct 202494 CATCTGCACGACGTGT-CGTTGAGAAATTTCCCAAACAGTTTTGTAGAGAGCTTTGATGT 202552 Query 22344 CTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403 | ||| || ||| |||| | ||| ||||| | | ||||| || || | Sbjct 202553 CGGCCGGGATGTTGGGGATATTCTGAATGGAACCGTTCTCGGCAATGATACGGTTCTTCA 202612 Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTT 22463 | | ||| ||| | || ||| || | |||||| | ||| |||| || || | Sbjct 202613 TAGCATCAGACCAAAGGCCCATGTCGACGAGATCTTTCAGCAGCCAGGGGTTGACAACCT 202672 Query 22464 GAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATT 22523 | || || || | || ||| |||||||||||||||||||| ||| | || ||||| | | Sbjct 202673 GGAATTCACCTGCCAGGACACGGCGTTGGTAAATGTTGGACGTGTAAGGCTCGAAGCACT 202732 Query 22524 CATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGT 22583 ||||||| || || ||||||| ||| ||||| || ||||| || || | ||| || |||| Sbjct 202733 CATTGTTACCTAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGGGCGAGCAGCAGTGAGT 202792 Query 22584 TTCTCAAGCCGTGCT--TTGAAATTTTACT-CTTGAGCATCGACCAGTCCCACAGATCGG 22640 | | | || |||| |||| | | || ||| || | ||| ||||| || || | Sbjct 202793 TGCGAATTCCATGCTCCTTGA---TCTGCTCCTTCAGACTATTCCACTCCCAGAGGTCAG 202849 Query 22641 ACGGCGTCACATTGTCCCACATATC 22665 | ||| |||| ||||||||| || Sbjct 202850 AAGGCTTCAC---GTCCCACATGTC 202871 >seq20 Length=366416 Score = 129 bits (142), Expect = 5e-25 Identities = 161/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 31205 GTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAA 31264 || |||||| |||| || || || || ||| |||| || ||| | || || | | |||| Sbjct 156591 GTCAAGACTTTGACCGGAAAGACCATTACCCTCGAGGTGGAATCTTCTGATACTATCGAC 156532 Query 31265 ACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAAT 31323 | |||||| || ||| | | ||||||||||| | || || |||||||||||||| || Sbjct 156531 AATGTCAAATCAAAGATTCAAG-ACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTGAT 156473 Query 31324 ATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGA 31383 |||||||||||||||||||||||| || | |||||||||||| || || || Sbjct 156472 TTTCGCTGGCAAACAGTTGGAAGACGGCCGTACGCTCGCCGATTATAACATCCAGAAGGA 156413 Query 31384 ATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || |||||||| || || | || | ||||||| Sbjct 156412 GTCCACACTTCATCTTGTTCTCCGCCTCCGTGGCGGTA 156375 Score = 86.0 bits (94), Expect = 6e-12 Identities = 116/160 (73%), Gaps = 10/160 (6%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || ||||| || || |||||| | || || ||| | || Sbjct 156375 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTTGAGGTGGAATCTTCT 156316 Query 31253 GACAGTGTCGA-AACG----GTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 |||| | || |||| |||||| | || ||||| |||||| | || |||| Sbjct 156315 GACACAATAGACAACGTGAAGTCAAAGATTCAA-----GACAAAGAAGGCATTCCTCCCG 156261 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||||||| || ||||| || |||||| | || || Sbjct 156260 ACCAGCAGCGTCTTATCTTCGCCGGGAAACAGCTTGAGGA 156221 >seq13 Length=451911 Score = 105 bits (116), Expect = 6e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || ||||| || ||||||||| |||| || || | Sbjct 17504 AAGATGCAGATTTTCGTCAAGACCCTCACAGGGAAGACGATCACCCTCGAGGTGGAGTCT 17445 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | ||||| | ||| ||||||||| ||| | || || ||| Sbjct 17444 TCCGACACCATCGACAACGTCAAGTCCAAAATCCAGGACAAGGAGGGCATCCCCCCAGAC 17385 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || || || |||||||| ||| | || || Sbjct 17384 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGA 17347 >seq96 Length=87723 Score = 98.7 bits (108), Expect = 9e-16 Identities = 198/293 (68%), Gaps = 3/293 (1%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||||||||| || || || || ||||| | |||||| | || ||| Sbjct 52883 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCTTTCTGGACGGCCGAAGAGATCGATCTG 52824 Query 57630 TCTAAGGATCTGAGCGATTGG---GATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || || ||| || ||| ||| || || || || ||||| | |||| || Sbjct 52823 TCGAAAGATTTGCACGACTGGAACAATCGTCTGAATGACGATGAGAAATATTTCATCTCC 52764 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||| | |||| || || || || || || || ||||| |||||||| ||||| || | Sbjct 52763 CACATTCTGGCATTCTTTGCTGCCTCTGACGGCATTGTCAACGAGAACTTGGTTGAGCGC 52704 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || ||||| ||||| | ||||| | |||||||||||||| || | || Sbjct 52703 TTCAGCGGCGAAGTCCAAGTCCCTGAGGCTCGTTGCTTTTACGGATTCCAGATCATGATG 52644 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 || || | || || |||| || || || | ||||| || ||| | ||||| Sbjct 52643 GAGAATATCCACTCGGAAACATACTCTCTCTTAATCGACACCTACATCAAGGA 52591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445751745429600