Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5 174 2e-38 seq96 147 3e-30 >seq5 Length=693879 Score = 174 bits (192), Expect = 2e-38 Identities = 456/689 (66%), Gaps = 14/689 (2%) Strand=Plus/Plus Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281 || ||||| | || ||||||| | ||| || |||| | || || || ||||| || Sbjct 203509 GGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGTTCTTCTCGACGCGCTTCATGAAA 203568 Query 63282 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTA 63341 ||||| |||||||||||||| | |||| ||| | | | ||| || || || | Sbjct 203569 AGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGCACGGACTTCTTCCTTGCCGTGA 203628 Query 63342 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63401 |||||| | ||| |||||| | | | ||| | ||||| || |||||||| ||||| Sbjct 203629 TTCTTTCGCAAATCAAGGAACTCAAACACATCGGCGTGCCAAGGCTCCAAGTAAATGGCA 203688 Query 63402 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63461 | | | ||||| || ||||| || ||||| || | ||||| || ||||| || |||| Sbjct 203689 AAAGCGCCAGGTCGCTTGTTGCCACCCTGGTCGACATATCTGGCCGTGTTGTTGAAAACA 203748 Query 63462 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTG 63521 | | ||| ||||| | ||| || || | || ||||| |||| || ||| ||| || Sbjct 203749 CGAAGCATGGGAATGACACCATTGGACGTCCCGTTGGTGCCGGCAATGTAGGAGCCAGTG 203808 Query 63522 GCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63579 || ||||| | ||| | || || || || || ||||| || ||||| | |||| Sbjct 203809 GCGCGAATGCGGTGGACATTCA-AG-CCGATACCACCAGCCATCTTGGAGATCATGGCGC 203866 Query 63580 ATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63639 | || | ||||||||||||||| || ||||| || || |||||| | || | Sbjct 203867 AGGTCTTGAGCGTGTCATAGATGCCCTCGATGCTGTCCTCCTTCATGTCGACGAGGA--- 203923 Query 63640 AGCTAGACATTTGGTGAC---GAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63696 ||| |||| | |||| ||| || || || || |||| || || || ||||| | Sbjct 203924 AGCAAGACGACAGCTGACATTGAGGTGTGCCAGCGTTGAATAGTGTGGGTGAGGCGTGTG 203983 Query 63697 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63756 | || ||| || | |||| ||| || || | || || |||| | Sbjct 203984 TGAAGAGTTTGCTGGACATGAGATGGTAGGTTTCCAGGACTCGCTCAATATTGTCTCCCC 204043 Query 63757 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTA 63816 || || || ||||||||||| | ||||||||| |||| || ||||| ||| ||| | Sbjct 204044 AGATCCCGACAGCGACACGCATAATCATGTGCTGGGGTCGCTCGACAATCTTGCCGTTGA 204103 Query 63817 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTC 63874 || | | || || |||||||| || || ||||| || | || ||||| || Sbjct 204104 GCTTGAGAAGATATGACCGCTCCAAAGTCTTGAAGCCAAAGTACTGATAGTTGAAA--TC 204161 Query 63875 TCGTTCGTAAATAATAACCGAATTGAGCT 63903 || || || | ||| | || | ||||| Sbjct 204162 TCTGTCATAGACAATGGCGGAGTCGAGCT 204190 >seq96 Length=87723 Score = 147 bits (162), Expect = 3e-30 Identities = 298/441 (68%), Gaps = 10/441 (2%) Strand=Plus/Plus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 || ||||| |||||||| ||||| ||||| || || || || || ||||||| || || Sbjct 51979 TTCTGGTACTCACCCACTCGTTTCTCGAAGAAGTTTGTCTTGCCACCCAATGAGATGTTC 52038 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 |||||||| ||||| ||||| | ||||| | || | | || | || || | Sbjct 52039 TCCATGAAGTCAAAAGGATTAGCCGTCTTGTACACCTTCTCATTACCAAGAGCAACAAGC 52098 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 | | ||| || || || || || || |||||||| | |||||| || | || Sbjct 52099 AGGCGATCGGCTACAAACTCAATGTACTGTTTCATCAATGTGGCATTCATGCCAAGTAGA 52158 Query 33471 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA 33530 | ||| | |||| |||| ||||| |||| || |||| || |||| ||| ||||| Sbjct 52159 GCACATGGCAAAGCCTCAGTCAGAAACTCTTTCTCGATGGTGACAGCATCTGTAATAATC 52218 Query 33531 A-----ATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATG 33585 ||| | | | || | ||||||| | | | | || || ||| || | Sbjct 52219 TGTTGGATC-ATCTGCTTGCTGGCTCGGTGCTTCAAGTGAGAGTG----CAGCAAGCAGG 52273 Query 33586 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGG 33645 | || || |||||||||||| || | ||||||||||| || || ||||| |||| Sbjct 52274 CAAAGTCTGTGTGCAGACCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACCGG 52333 Query 33646 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTC 33705 |||| | ||||||||| || ||||| || || ||||| || | ||| ||||| || | Sbjct 52334 GCATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCTGAAGAAAATAC 52393 Query 33706 CTTCTACTGCAGCAAAGGCAA 33726 |||| || |||||||| |||| Sbjct 52394 CTTCCACGGCAGCAAAAGCAA 52414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629796894746400