Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq20 122 9e-23 >seq20 Length=366416 Score = 122 bits (134), Expect = 9e-23 Identities = 170/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || |||||||| || ||||| | || ||||| || |||||||| || || Sbjct 156146 TGGCCACCACGCAAACGCAACACCAAGTGCAAGGTTGACTCCTTCTGAATGTTGTAGTCT 156205 Query 139595 CTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 139653 | ||| | || | || || |||||||| || || |||| ||||| ||||| ||||| Sbjct 156206 GCAAGTGTCCGTCCA-TCCTCAAGCTGTTTCCCGGCGAAGATAAGACGCTGCTGGTCGGG 156264 Query 139654 AGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCT 139712 ||| |||||||||||||| ||| | |||| || | | || | |||||| | | | Sbjct 156265 AGGAATGCCTTCTTTGTC-TTGAATCTTTGACTTCACGTTGTCTATTGTGTCAGAAGATT 156323 Query 139713 CCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||| ||| | ||||| || || | || || ||||| || |||||| Sbjct 156324 CCACCTCAAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCATA 156376 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | || | ||| | |||| || ||||| || || |||||||||||| Sbjct 156377 CCGCCACGGAGGCGGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTATAATCGGCG 156436 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| | |||||| ||||| | |||||||| ||||| || ||||| Sbjct 156437 AGCGTACGGCCGTCTTCCAACTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGA 156496 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| | |||| ||| | | || | || || | | ||||| Sbjct 156497 ATGCCTTCCTTGTC-TTGAATCTTTGATTTGACATTGTCGATAGTATCAGAAGATTCCAC 156555 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTAC 139752 ||| | ||| | ||||| |||||||| || || || Sbjct 156556 CTCGAGGGTAATGGTCTTTCCGGTCAAAGTCTTGAC 156591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496047691896000