Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq5 179 5e-40
seq96 152 7e-32
>seq5
Length=693879
Score = 179 bits (198), Expect = 5e-40
Identities = 458/690 (66%), Gaps = 14/690 (2%)
Strand=Plus/Plus
Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950
|| || ||||||| || ||||||| | ||| || || | | || || || |||||
Sbjct 203506 CCGGGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGTTCTTCTCGACGCGCTTCATG 203565
Query 79951 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010
|| ||||| |||||||||||||| | |||| ||| | | | || || || ||
Sbjct 203566 AAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGCACGGACTTCTTCCTTGCCG 203625
Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070
||||||| | ||| |||||| | | | ||| | ||||| || |||||||| |||
Sbjct 203626 TGATTCTTTCGCAAATCAAGGAACTCAAACACATCGGCGTGCCAAGGCTCCAAGTAAATG 203685
Query 80071 GCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 80130
|| | | | || ||||| ||||| || ||||| || | ||||| || ||||| || ||
Sbjct 203686 GCAAAAGCGCCAGGTCGCTTGTTGCCACCCTGGTCGACATATCTGGCCGTGTTGTTGAAA 203745
Query 80131 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 80190
|| | | ||| ||||| | ||||||||| || || ||||| |||| || ||| |||
Sbjct 203746 ACACGAAGCATGGGAATGACACCATTGGACGTCCCGTTGGTGCCGGCAATGTAGGAGCCA 203805
Query 80191 CTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 80248
|||| ||||| | ||| | || || || || || ||||| || ||||| | |
Sbjct 203806 GTGGCGCGAATGCGGTGGACATTCA-AG-CCGATACCACCAGCCATCTTGGAGATCATGG 203863
Query 80249 CGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAA 80308
|||| || | ||| |||||||||||||| ||||| || || |||||| | || |
Sbjct 203864 CGCAGGTCTTGAGCGTGTCATAGATGCCCTCGATGCTGTCCTCCTTCATGTCGACGAGGA 203923
Query 80309 AACAGCTAGACATTTGGTGAC---GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 80365
||| |||| | |||| || || || || || |||| || || || ||||
Sbjct 203924 ---AGCAAGACGACAGCTGACATTGAGGTGTGCCAGCGTTGAATAGTGTGGGTGAGGCGT 203980
Query 80366 GCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATT 80425
| || || ||| |||| |||| ||| || || | || || |||| |
Sbjct 203981 GTGTGAAGAGTTTGCTGGACATGAGATGGTAGGTTTCCAGGACTCGCTCAATATTGTCTC 204040
Query 80426 GATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTAT 80485
|| || || ||||||||||| | ||||||||| |||| || || |||||| |
Sbjct 204041 CCCAGATCCCGACAGCGACACGCATAATCATGTGCTGGGGTCGCTCGACAATCTTGCCGT 204100
Query 80486 TTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAA 80543
| | || | | || || |||||||| || || ||||| || | || |||||
Sbjct 204101 TGAGCTTGAGAAGATATGACCGCTCCAAAGTCTTGAAGCCAAAGTACTGATAGTTGAAA- 204159
Query 80544 GTCTCGTTCGTAAATAATAACCGAGTTGAG 80573
|||| || || | ||| | |||| |||
Sbjct 204160 -TCTCTGTCATAGACAATGGCGGAGTCGAG 204188
>seq96
Length=87723
Score = 152 bits (168), Expect = 7e-32
Identities = 338/505 (67%), Gaps = 13/505 (3%)
Strand=Plus/Plus
Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728
|| ||||| |||||||| ||||| ||||| || || || || || ||||||| || ||
Sbjct 51979 TTCTGGTACTCACCCACTCGTTTCTCGAAGAAGTTTGTCTTGCCACCCAATGAGATGTTC 52038
Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788
|||||||| ||||| ||||| | || || | || | | || | || || |
Sbjct 52039 TCCATGAAGTCAAAAGGATTAGCCGTCTTGTACACCTTCTCATTACCAAGAGCAACAAGC 52098
Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848
| | ||| || ||||| || || || |||||||| | |||||| || | ||
Sbjct 52099 AGGCGATCGGCTACAAACTCAATGTACTGTTTCATCAATGTGGCATTCATGCCAAGTAGA 52158
Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908
| ||| | |||| |||| ||||| |||| || |||| || |||||||| |||||
Sbjct 52159 GCACATGGCAAAGCCTCAGTCAGAAACTCTTTCTCGATGGTGACAGCATCTGTAATAATC 52218
Query 49909 -----GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATG 49963
|||| | | | || | ||||||| | | | | || || ||| || |
Sbjct 52219 TGTTGGATC-ATCTGCTTGCTGGCTCGGTGCTTCAAGTGAGAGTG----CAGCAAGCAGG 52273
Query 49964 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 50023
| || || |||||||||||| || | |||| ||||||||| || ||||| ||||
Sbjct 52274 CAAAGTCTGTGTGCAGACCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACCGG 52333
Query 50024 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTC 50083
|||| | ||||||||| || ||||| || || || ||||| | || ||||| || |
Sbjct 52334 GCATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCTGAAGAAAATAC 52393
Query 50084 CTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGTATCC 50140
|||| || || ||||| ||||| | | || | | |||| | |||| || ||||
Sbjct 52394 CTTCCACGGCAGCAAAAGCAACCAAGCGCTGGGCGAAGCTGGATTCTTTGTCCTGAATCC 52453
Query 50141 ACTTTTGAGCCCAATCGGCCTTCTT 50165
| ||||||||| ||||||||
Sbjct 52454 AACGGATAGCCCAATCTGCCTTCTT 52478
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718245186913200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |