Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq5 185 1e-41
seq96 159 5e-34
>seq5
Length=693879
Score = 185 bits (204), Expect = 1e-41
Identities = 333/479 (70%), Gaps = 16/479 (3%)
Strand=Plus/Minus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| ||||| || || || |||||| | ||| | |||||||| ||||||||||| ||
Sbjct 203717 CAGGGTGGCAACAAGCGACCTGGCGCTTTTGCCATTTACTTGGAGCCTTGGCACGCCGAT 203658
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| ||||| || | || |||| || || ||| ||||| | || || | ||
Sbjct 203657 GTGTTTGAGTTCCTTGATTTGCGAAAGAATCACGGCAAGGAAGAAGTCCGTGCTCGTGAT 203598
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC---AACGACGGTGGC 97052
|| || ||| || ||| | || ||| | ||||||||||||||| || ||||||
Sbjct 203597 TTATTCCTTGCTCTTTGGATTCCCGATCTTTTCATGAAGCGCGTCGAGAAGAACGGTG-- 203540
Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112
| |||| || ||||||||| || | ||||| ||| | || |||| ||||| |||
Sbjct 203539 -ATTGGACTCTGATGTGCCCCAACGAATGCCCCGGCCTGGCTGACTGCTACGGCGAGGAG 203481
Query 97113 TTTGAGGC---CAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGA 97168
|||||||| | | | | | || |||| |||||| | |||| ||| | |||
Sbjct 203480 TTTGAGGCTCTCTATGAAAAG---TATGAGCGTGAGGGCAAGGGTCGTGCGACCATTCG- 203425
Query 97169 TGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACA 97227
||| | |||| || ||| | ||||| || ||| ||| |||||| || | ||| | ||
Sbjct 203424 TGC-CCAGAAGCTCTGGTACTCCATCCTGGAGGCCCAGACAGAGACGGGTAATCCTTTCA 203366
Query 97228 TTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGG 97287
| |||||||||||| || || | || |||||||| ||||||| || |||
Sbjct 203365 TGCTCTACAAGGATGCCTGCAACAGGAAGAGCAACCAGAAGAACTTGGGAACAATCCGCA 203306
Query 97288 GCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346
||||||| || |||||||||||||| |||||| | | || || ||| || ||||||
Sbjct 203305 GCTCCAACCTTTGCACGGAAATTGTCGAGTACTCTGCCCCTGATGAGGTCGCTGTTTGC 203247
>seq96
Length=87723
Score = 159 bits (176), Expect = 5e-34
Identities = 204/274 (74%), Gaps = 14/274 (5%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| |||||||||||||||| |||| || || ||||||| ||||||| ||||||||
Sbjct 52883 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCTTTCTGGACGGCCGAAGAGATCGATCTG 52824
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
|| || || || |||| ||| | | |||| ||| ||| |||| | | || || ||
Sbjct 52823 TCGAAAGATTTGCACGACTGGAACAATCGTCTGAATGACGATGAGAAATATTTCATCTCC 52764
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAA-TCTGTTGACACG 125197
|||||| |||| |||||||| | ||| || || || |||||||| || | ||||| ||
Sbjct 52763 CACATTCTGGCATTCTTTGCTGCCTCTGACGGCATTGTCAACGAGAACTTGGTTGA-GCG 52705
Query 125198 ATTCTCTCAAGAGTTGA---CCA--TTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAAT 125251
||| || | || ||| | || |||| ||| ||||||||||||||||| ||
Sbjct 52704 CTTC-----AGCGGCGAAGTCCAAGTCCCTGAGG-CTCGTTGCTTTTACGGATTCCAGAT 52651
Query 125252 CATGATTGAGAACGTGCACTCGGAAATGTACTCT 125285
|||||| ||||| | |||||||||| ||||||
Sbjct 52650 CATGATGGAGAATATCCACTCGGAAACATACTCT 52617
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741034837678800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |