Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq5 170 2e-37
seq96 147 3e-30
>seq5
Length=693879
Score = 170 bits (188), Expect = 2e-37
Identities = 456/690 (66%), Gaps = 14/690 (2%)
Strand=Plus/Plus
Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227
|| || ||||| | || ||||||| | ||| || |||| | || || || |||||
Sbjct 203506 CCGGGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGTTCTTCTCGACGCGCTTCATG 203565
Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287
|| ||||| |||||||||||||| | |||| ||| | | | ||| || || ||
Sbjct 203566 AAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGCACGGACTTCTTCCTTGCCG 203625
Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347
||||||| | ||| |||||| | | | ||| | ||||| || |||||||| |||
Sbjct 203626 TGATTCTTTCGCAAATCAAGGAACTCAAACACATCGGCGTGCCAAGGCTCCAAGTAAATG 203685
Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407
|| | | | ||||| || ||||| || ||||| || | ||||| || ||||| || ||
Sbjct 203686 GCAAAAGCGCCAGGTCGCTTGTTGCCACCCTGGTCGACATATCTGGCCGTGTTGTTGAAA 203745
Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467
|| | | ||| ||||| | ||| || || | || ||||| |||| || ||| |||
Sbjct 203746 ACACGAAGCATGGGAATGACACCATTGGACGTCCCGTTGGTGCCGGCAATGTAGGAGCCA 203805
Query 63468 CTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63525
|||| ||||| | ||| | || || || || || ||||| || ||||| | |
Sbjct 203806 GTGGCGCGAATGCGGTGGACATTCA-AG-CCGATACCACCAGCCATCTTGGAGATCATGG 203863
Query 63526 CGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAA 63585
|||| || | |||||||||||| ||||| ||||| || || |||||| | || |
Sbjct 203864 CGCAGGTCTTGAGCGTGTCATAGATGCCCTCGATGCTGTCCTCCTTCATGTCGACGAGGA 203923
Query 63586 AACAGCTAGACATTTGGTGAC---GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63642
||| |||| | |||| || || || || || |||| || || || ||||
Sbjct 203924 ---AGCAAGACGACAGCTGACATTGAGGTGTGCCAGCGTTGAATAGTGTGGGTGAGGCGT 203980
Query 63643 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 63702
| || || ||| || | |||| ||| || || | || || |||| |
Sbjct 203981 GTGTGAAGAGTTTGCTGGACATGAGATGGTAGGTTTCCAGGACTCGCTCAATATTGTCTC 204040
Query 63703 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 63762
|| || || ||||||||||| | ||||||||| |||| || || |||||| ||
Sbjct 204041 CCCAGATCCCGACAGCGACACGCATAATCATGTGCTGGGGTCGCTCGACAATCTTGCCGT 204100
Query 63763 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAA 63820
| | || | | || || |||||||| || || ||||| || | || |||||
Sbjct 204101 TGAGCTTGAGAAGATATGACCGCTCCAAAGTCTTGAAGCCAAAGTACTGATAGTTGAAA- 204159
Query 63821 GTCTCGTTCGTAAATAATAACCGAGTTGAG 63850
|||| || || | ||| | |||| |||
Sbjct 204160 -TCTCTGTCATAGACAATGGCGGAGTCGAG 204188
>seq96
Length=87723
Score = 147 bits (162), Expect = 3e-30
Identities = 298/441 (68%), Gaps = 10/441 (2%)
Strand=Plus/Plus
Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072
|| ||||| |||||||| ||||| ||||| || || || || || ||||||| || ||
Sbjct 51979 TTCTGGTACTCACCCACTCGTTTCTCGAAGAAGTTTGTCTTGCCACCCAATGAGATGTTC 52038
Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132
|||||||| ||||| ||||| | || || | || | | || | || || |
Sbjct 52039 TCCATGAAGTCAAAAGGATTAGCCGTCTTGTACACCTTCTCATTACCAAGAGCAACAAGC 52098
Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192
| | ||| || || || || || || |||||||| | |||||| || | ||
Sbjct 52099 AGGCGATCGGCTACAAACTCAATGTACTGTTTCATCAATGTGGCATTCATGCCAAGTAGA 52158
Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 33252
| ||| | |||| |||| ||||| |||| || |||| || |||||||| |||||
Sbjct 52159 GCACATGGCAAAGCCTCAGTCAGAAACTCTTTCTCGATGGTGACAGCATCTGTAATAATC 52218
Query 33253 -----GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATG 33307
|||| | | | || | ||||||| | | | | || || ||| || |
Sbjct 52219 TGTTGGATC-ATCTGCTTGCTGGCTCGGTGCTTCAAGTGAGAGTG----CAGCAAGCAGG 52273
Query 33308 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 33367
| || || |||||||||||| || | |||| ||||||||| || ||||| ||||
Sbjct 52274 CAAAGTCTGTGTGCAGACCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACCGG 52333
Query 33368 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTC 33427
|||| | ||||||||| || ||||| || || ||||| || | || ||||| || |
Sbjct 52334 GCATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCTGAAGAAAATAC 52393
Query 33428 CTTCTACTGCAGCAAAGGCAA 33448
|||| || |||||||| ||||
Sbjct 52394 CTTCCACGGCAGCAAAAGCAA 52414
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622926720610800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |