Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq5 426 4e-114
seq96 93.3 1e-13
>seq5
Length=693879
Score = 426 bits (472), Expect = 4e-114
Identities = 1091/1632 (67%), Gaps = 38/1632 (2%)
Strand=Plus/Minus
Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606
||||| |||||| | || ||| | | ||| ||||| || | | | ||| |||| |||
Sbjct 203987 TTCACACACGCCTCACCCACACTATTCAACGCTGGCACACCTCAATGTCAGCTGTCGTCT 203928
Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666
||||| || | | |||||||| || ||||||||| |||| |||||| || ||||
Sbjct 203927 TGCTTCCTCGTCGACATGAAGGAGGACAGCATCGAGGGCATCTATGACACGCTCAAGACC 203868
Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGG--TGTATCGATCCACAATGTTCGTG 363724
|| || | || ||||||| || || || || || || || ||||| |||| |
Sbjct 203867 TGCGCCATGATCTCCAAGATGGCTGGTGGTATCGGCTTGAATG--TCCACCGCATTCGCG 203810
Query 363725 C-ACAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCT 363782
| || | | |||||| |||||| | |||| || ||||| | ||||||||||
Sbjct 203809 CCACTGG-CTCCTACATTGCCGGCACCAACGGGACG-TCCAATGGTGTCATTCCCATGCT 203752
Query 363783 TCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGC 363842
|||||| || |||| || || || || |||||||||||||| ||||| || ||
Sbjct 203751 TCGTGTTTTCAACAACACGGCCAGATATGTCGACCAGGGTGGCAACAAGCGACCTGGCGC 203692
Query 363843 GTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA 363902
||||| || || | |||||| || |||||| | |||||||| ||||| | || ||
Sbjct 203691 TTTTGCCATTTACTTGGAGCCTTGGCACGCCGATGTGTTTGAGTTCCTTGATTTGCGAAA 203632
Query 363903 AAA-CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTG 363961
|| ||||| || || ||| | ||||| |||||| | ||| ||| |||||| || | |
Sbjct 203631 GAATCACGGCAAG-GAAGAAGTCCGTGCTCGTGATTTATTCCTTGCTCTTTGGATTCCCG 203573
Query 363962 ACCATTTTATGAAGCGCGTGGAGGCAGGTAAG--AATTGGTCACTCTTTTGCCCACACGA 364019
| | ||| ||||||||||| ||| | | | | ||||| | || | ||||| ||||
Sbjct 203572 ATCTTTTCATGAAGCGCGTCGAG--AAGAACGGTGATTGGACTCTGATGTGCCCCAACGA 203515
Query 364020 ATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGA 364079
||| || || || | || | || || || | || ||||| || |||||||||||
Sbjct 203514 ATGCCCCGGCCTGGCTGACTGCTACGGCGAGGAGTTTGAGGCTCTCTATGAAAAGTATGA 203455
Query 364080 ATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGA 364139
||||| |||| |||| ||| |||| || |||||||| |||| ||||| ||||
Sbjct 203454 GCGTGAGGGCAAGGGTCGTGCGACCATTCGTGCCCAGAAGCTCTGGTACTCCATCCTGGA 203395
Query 364140 TTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTC 364199
| |||| ||||| || | || | ||| | ||||| ||| | |||||| | |||
Sbjct 203394 GGCCCAGACAGAGACGGGTAATCCTTTCATGCTCTACAAGGATGCCTGCAACAGGAAGAG 203335
Query 364200 CAACCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAAT 364258
||||||| || || | || |||| || |||| |||||| || || || ||| | || |
Sbjct 203334 CAACCAGAAGAACTTGGGAACAA-TCCGCAGCTCCAACCTTTGCACGGAAATTGTCGAGT 203276
Query 364259 ACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTG 364318
|| | || || || ||| || || || ||| | || || | || || || || || |
Sbjct 203275 ACTCTGCCCCTGATGAGGTCGCTGTTTGCAACTTGGCCTCTCTGGCTCTGCCTGCCTTCG 203216
Query 364319 TA------AAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTA 364372
|| || || || | ||| |||| | || | || || ||| | | |
Sbjct 203215 TAGACTACAACGAGGGACGCTACGACTTCCAGAAGCTCCACGAGGTCACCCAGGTCGTTG 203156
Query 364373 CTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTT 364432
| |||| || ||| | || || || | || || | | || ||| |
Sbjct 203155 TTCGCAACCTGAACAGAATCATTGATGTCAACCACTACCCCGTCCAGGAGGCCCGGAACA 203096
Query 364433 CTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGA 364492
|| ||||| || || ||||||||| |||| || ||||| ||||| |||| ||| |
Sbjct 203095 GCAACATGCGACACCGGCCGATTGGTGTTGGCGTCCAGGGTCTCGCCGACGCTTTCCT-- 203038
Query 364493 TGC--TCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGA 364550
||| | ||| ||||||| || ||||| || |||| || || ||| |||| |||||
Sbjct 203037 TGCCTTGCGCATGCCATTTGAGTCCCCTGAGGCCCGTGAGCTCAACAAGCAGATATTTGA 202978
Query 364551 AACAATGTATTTTGCCGCAATGACTGCTTCGTGT-GATTTGG-CAAAAACCAAGGGAAAG 364608
|| || || ||| || | ||||| || ||| || |||| ||| | ||| |||
Sbjct 202977 GACCATCTACCATGCTGCCCTCACTGCCTC-TGTCGAATTGGCCAAGGAGCAA-GGACCT 202920
Query 364609 TACTCTACTTATGAGGGGTC-CCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAA 364667
|||||||| | |||||| || ||| | | || |||| | | |||||||| | ||| |
Sbjct 202919 TACTCTACCTTTGAGGGCTCTCCCGCCTCCG-AGGGCATTCTTCAGTTTGACATGTGGGA 202861
Query 364668 TGTCACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATG 364726
|| | ||| |||| || ||| | ||| ||| || | | | | | ||| ||||||
Sbjct 202860 CGTGAAGCCTTCTGACCTCTGGGAGTGGAATAGTCTGAAGGAGC-AGATCAAGGAGCATG 202802
Query 364727 GTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCG 364786
| | ||||||||| || | || |||||||| ||||||||||| | ||||| || |
Sbjct 202801 GAATTCGCAACTCACTGCTGCTCGCCCCCATGCCTACGGCTTCTACCTCTCAGATTCTAG 202742
Query 364787 GAAACAACGAGTGCTTCGAACCGTTTACAAG--CAATCTTTATTCACGCCGGGTTCTTTC 364844
| ||||| ||||||||||| || ||||| | ||| |||| |||||| || || |
Sbjct 202741 GTAACAATGAGTGCTTCGAGCC--TTACACGTCCAACATTTACCAACGCCGTGTCCTGGC 202684
Query 364845 CGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTG 364904
|| ||||| | ||| || || | || | || ||||| |||| || || ||
Sbjct 202683 AGGTGAATTCCAGGTTGTCAACCCCTGGCTGCTGAAAGATCTCGTCGACATGGGCCTTTG 202624
Query 364905 GGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGG 364964
| ||| ||||||||| |||||| |||| || ||||| | ||||| || ||
Sbjct 202623 GTCTGATGCTATGAAGAACCGTATCATTGCCGAGAACGGTTCCATTCAGAATATCCCCAA 202564
Query 364965 ATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCT 365024
| || | || | || || | |||||||| || ||||||||||| ||| |
Sbjct 202563 CATCCCGGCCGACATCAAAGCTCTCTACAAAACTGTTTGGGAAATTTCTCAACGACACGT 202504
Query 365025 CATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATT 365084
| | | ||||| || || || |||||||| ||| ||| |||||| ||||| |
Sbjct 202503 CGTGCAGATGGCTGCTGACCGTGGTGCTTTCATCGACCAGTCCCAGTCTCTTAACATTCA 202444
Query 365085 CATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGG 365144
||||| | || || | |||| | || |||||||| || ||| |||||| ||
Sbjct 202443 CATGAAGGATCCCACTATGGGCAAGATCACTTCCATGCACTTTACCGGCTGGAAACTGGG 202384
Query 365145 TCTTAAGACAGG 365156
|| ||||| ||
Sbjct 202383 CCTCAAGACGGG 202372
>seq96
Length=87723
Score = 93.3 bits (102), Expect = 1e-13
Identities = 341/524 (65%), Gaps = 20/524 (4%)
Strand=Plus/Minus
Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCA--TTCGCGGAAC 22492
|| |||||||||||||| | ||||| | |||| ||| | || ||||| | |
Sbjct 52478 AAGAAGGCAGATTGGGCTATCCGTTGGATTCAGGACAAAGAA--TCCAGCTTCGCCCAGC 52421
Query 22493 GTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCT 22552
| | |||| ||||||| || ||||| |||||||| || || ||| | | ||||
Sbjct 52420 GCTTGGTTGCTTTTGCTGCCGTGGAAGGTATTTTCTTCAGCGGTGCTTTTGCTTCTATCT 52361
Query 22553 TTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCC 22612
| ||||| || || |||| | ||||| ||||| || || || || || ||||| |
Sbjct 52360 TCTGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAATTAATCTCGC 52301
Query 22613 GAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATA-TCGGAATCATATCATTCA- 22670
| ||||||||||| || || || ||||| || |||| | || | | | || |
Sbjct 52300 GTGATGAGGGTCTGCACACAGACTTTGCCTGCTTGCTGCACTCTCACTTGAAGCACCGAG 52241
Query 22671 TAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGT--TGAACTTGAACGT 22728
| | || |||| | | | ||||||||| |||| || | | ||| |
Sbjct 52240 CCAGCAAGCAGATGA-----TCCAACAGATTATTACAGATGCTGTCACCATCGAGAAAG- 52187
Query 22729 CTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGT 22788
||| | ||||| || ||| ||| |||| || |||||| || ||||
Sbjct 52186 -AGTTTCTGACTGAGGCTTTGCCATGTGCTCTACTTGGCATGAATGCCACATTGATGA-A 52129
Query 22789 ACA-TATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTA 22847
||| || ||| | ||||| || ||||| || | || | || ||| ||| ||| ||
Sbjct 52128 ACAGTACATTGAGTTTGTAGCCGATCGCCTGCTTGTTGCTCTTGGTAATGAGAAGGTGTA 52069
Query 22848 TAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTT 22907
|| | |||||| ||||| | ||||| || ||| | | || ||||| || ||
Sbjct 52068 CAAGACGGCTAATCCTTTTGACTTCATGGAGAACATCTCATTGGGTGGCAAGACAAACTT 52009
Query 22908 CTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGG 22951
|||||| ||| |||| ||||| ||||| || || ||||| ||||
Sbjct 52008 CTTCGAGAAACGAGTGGGTGAGTACCAGAAGGCTGGTGTCATGG 51965
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303309681056660
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