Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5 426 4e-114 seq96 93.3 1e-13 >seq5 Length=693879 Score = 426 bits (472), Expect = 4e-114 Identities = 1091/1632 (67%), Gaps = 38/1632 (2%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||| | || ||| | | ||| ||||| || | | | ||| |||| ||| Sbjct 203987 TTCACACACGCCTCACCCACACTATTCAACGCTGGCACACCTCAATGTCAGCTGTCGTCT 203928 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | |||||||| || ||||||||| |||| |||||| || |||| Sbjct 203927 TGCTTCCTCGTCGACATGAAGGAGGACAGCATCGAGGGCATCTATGACACGCTCAAGACC 203868 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGG--TGTATCGATCCACAATGTTCGTG 363724 || || | || ||||||| || || || || || || || ||||| |||| | Sbjct 203867 TGCGCCATGATCTCCAAGATGGCTGGTGGTATCGGCTTGAATG--TCCACCGCATTCGCG 203810 Query 363725 C-ACAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCT 363782 | || | | |||||| |||||| | |||| || ||||| | |||||||||| Sbjct 203809 CCACTGG-CTCCTACATTGCCGGCACCAACGGGACG-TCCAATGGTGTCATTCCCATGCT 203752 Query 363783 TCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGC 363842 |||||| || |||| || || || || |||||||||||||| ||||| || || Sbjct 203751 TCGTGTTTTCAACAACACGGCCAGATATGTCGACCAGGGTGGCAACAAGCGACCTGGCGC 203692 Query 363843 GTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA 363902 ||||| || || | |||||| || |||||| | |||||||| ||||| | || || Sbjct 203691 TTTTGCCATTTACTTGGAGCCTTGGCACGCCGATGTGTTTGAGTTCCTTGATTTGCGAAA 203632 Query 363903 AAA-CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTG 363961 || ||||| || || ||| | ||||| |||||| | ||| ||| |||||| || | | Sbjct 203631 GAATCACGGCAAG-GAAGAAGTCCGTGCTCGTGATTTATTCCTTGCTCTTTGGATTCCCG 203573 Query 363962 ACCATTTTATGAAGCGCGTGGAGGCAGGTAAG--AATTGGTCACTCTTTTGCCCACACGA 364019 | | ||| ||||||||||| ||| | | | | ||||| | || | ||||| |||| Sbjct 203572 ATCTTTTCATGAAGCGCGTCGAG--AAGAACGGTGATTGGACTCTGATGTGCCCCAACGA 203515 Query 364020 ATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGA 364079 ||| || || || | || | || || || | || ||||| || ||||||||||| Sbjct 203514 ATGCCCCGGCCTGGCTGACTGCTACGGCGAGGAGTTTGAGGCTCTCTATGAAAAGTATGA 203455 Query 364080 ATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGA 364139 ||||| |||| |||| ||| |||| || |||||||| |||| ||||| |||| Sbjct 203454 GCGTGAGGGCAAGGGTCGTGCGACCATTCGTGCCCAGAAGCTCTGGTACTCCATCCTGGA 203395 Query 364140 TTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTC 364199 | |||| ||||| || | || | ||| | ||||| ||| | |||||| | ||| Sbjct 203394 GGCCCAGACAGAGACGGGTAATCCTTTCATGCTCTACAAGGATGCCTGCAACAGGAAGAG 203335 Query 364200 CAACCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAAT 364258 ||||||| || || | || |||| || |||| |||||| || || || ||| | || | Sbjct 203334 CAACCAGAAGAACTTGGGAACAA-TCCGCAGCTCCAACCTTTGCACGGAAATTGTCGAGT 203276 Query 364259 ACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTG 364318 || | || || || ||| || || || ||| | || || | || || || || || | Sbjct 203275 ACTCTGCCCCTGATGAGGTCGCTGTTTGCAACTTGGCCTCTCTGGCTCTGCCTGCCTTCG 203216 Query 364319 TA------AAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTA 364372 || || || || | ||| |||| | || | || || ||| | | | Sbjct 203215 TAGACTACAACGAGGGACGCTACGACTTCCAGAAGCTCCACGAGGTCACCCAGGTCGTTG 203156 Query 364373 CTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTT 364432 | |||| || ||| | || || || | || || | | || ||| | Sbjct 203155 TTCGCAACCTGAACAGAATCATTGATGTCAACCACTACCCCGTCCAGGAGGCCCGGAACA 203096 Query 364433 CTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGA 364492 || ||||| || || ||||||||| |||| || ||||| ||||| |||| ||| | Sbjct 203095 GCAACATGCGACACCGGCCGATTGGTGTTGGCGTCCAGGGTCTCGCCGACGCTTTCCT-- 203038 Query 364493 TGC--TCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGA 364550 ||| | ||| ||||||| || ||||| || |||| || || ||| |||| ||||| Sbjct 203037 TGCCTTGCGCATGCCATTTGAGTCCCCTGAGGCCCGTGAGCTCAACAAGCAGATATTTGA 202978 Query 364551 AACAATGTATTTTGCCGCAATGACTGCTTCGTGT-GATTTGG-CAAAAACCAAGGGAAAG 364608 || || || ||| || | ||||| || ||| || |||| ||| | ||| ||| Sbjct 202977 GACCATCTACCATGCTGCCCTCACTGCCTC-TGTCGAATTGGCCAAGGAGCAA-GGACCT 202920 Query 364609 TACTCTACTTATGAGGGGTC-CCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAA 364667 |||||||| | |||||| || ||| | | || |||| | | |||||||| | ||| | Sbjct 202919 TACTCTACCTTTGAGGGCTCTCCCGCCTCCG-AGGGCATTCTTCAGTTTGACATGTGGGA 202861 Query 364668 TGTCACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATG 364726 || | ||| |||| || ||| | ||| ||| || | | | | | ||| |||||| Sbjct 202860 CGTGAAGCCTTCTGACCTCTGGGAGTGGAATAGTCTGAAGGAGC-AGATCAAGGAGCATG 202802 Query 364727 GTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCG 364786 | | ||||||||| || | || |||||||| ||||||||||| | ||||| || | Sbjct 202801 GAATTCGCAACTCACTGCTGCTCGCCCCCATGCCTACGGCTTCTACCTCTCAGATTCTAG 202742 Query 364787 GAAACAACGAGTGCTTCGAACCGTTTACAAG--CAATCTTTATTCACGCCGGGTTCTTTC 364844 | ||||| ||||||||||| || ||||| | ||| |||| |||||| || || | Sbjct 202741 GTAACAATGAGTGCTTCGAGCC--TTACACGTCCAACATTTACCAACGCCGTGTCCTGGC 202684 Query 364845 CGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTG 364904 || ||||| | ||| || || | || | || ||||| |||| || || || Sbjct 202683 AGGTGAATTCCAGGTTGTCAACCCCTGGCTGCTGAAAGATCTCGTCGACATGGGCCTTTG 202624 Query 364905 GGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGG 364964 | ||| ||||||||| |||||| |||| || ||||| | ||||| || || Sbjct 202623 GTCTGATGCTATGAAGAACCGTATCATTGCCGAGAACGGTTCCATTCAGAATATCCCCAA 202564 Query 364965 ATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCT 365024 | || | || | || || | |||||||| || ||||||||||| ||| | Sbjct 202563 CATCCCGGCCGACATCAAAGCTCTCTACAAAACTGTTTGGGAAATTTCTCAACGACACGT 202504 Query 365025 CATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATT 365084 | | | ||||| || || || |||||||| ||| ||| |||||| ||||| | Sbjct 202503 CGTGCAGATGGCTGCTGACCGTGGTGCTTTCATCGACCAGTCCCAGTCTCTTAACATTCA 202444 Query 365085 CATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGG 365144 ||||| | || || | |||| | || |||||||| || ||| |||||| || Sbjct 202443 CATGAAGGATCCCACTATGGGCAAGATCACTTCCATGCACTTTACCGGCTGGAAACTGGG 202384 Query 365145 TCTTAAGACAGG 365156 || ||||| || Sbjct 202383 CCTCAAGACGGG 202372 >seq96 Length=87723 Score = 93.3 bits (102), Expect = 1e-13 Identities = 341/524 (65%), Gaps = 20/524 (4%) Strand=Plus/Minus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCA--TTCGCGGAAC 22492 || |||||||||||||| | ||||| | |||| ||| | || ||||| | | Sbjct 52478 AAGAAGGCAGATTGGGCTATCCGTTGGATTCAGGACAAAGAA--TCCAGCTTCGCCCAGC 52421 Query 22493 GTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCT 22552 | | |||| ||||||| || ||||| |||||||| || || ||| | | |||| Sbjct 52420 GCTTGGTTGCTTTTGCTGCCGTGGAAGGTATTTTCTTCAGCGGTGCTTTTGCTTCTATCT 52361 Query 22553 TTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCC 22612 | ||||| || || |||| | ||||| ||||| || || || || || ||||| | Sbjct 52360 TCTGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAATTAATCTCGC 52301 Query 22613 GAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATA-TCGGAATCATATCATTCA- 22670 | ||||||||||| || || || ||||| || |||| | || | | | || | Sbjct 52300 GTGATGAGGGTCTGCACACAGACTTTGCCTGCTTGCTGCACTCTCACTTGAAGCACCGAG 52241 Query 22671 TAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGT--TGAACTTGAACGT 22728 | | || |||| | | | ||||||||| |||| || | | ||| | Sbjct 52240 CCAGCAAGCAGATGA-----TCCAACAGATTATTACAGATGCTGTCACCATCGAGAAAG- 52187 Query 22729 CTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGT 22788 ||| | ||||| || ||| ||| |||| || |||||| || |||| Sbjct 52186 -AGTTTCTGACTGAGGCTTTGCCATGTGCTCTACTTGGCATGAATGCCACATTGATGA-A 52129 Query 22789 ACA-TATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTA 22847 ||| || ||| | ||||| || ||||| || | || | || ||| ||| ||| || Sbjct 52128 ACAGTACATTGAGTTTGTAGCCGATCGCCTGCTTGTTGCTCTTGGTAATGAGAAGGTGTA 52069 Query 22848 TAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTT 22907 || | |||||| ||||| | ||||| || ||| | | || ||||| || || Sbjct 52068 CAAGACGGCTAATCCTTTTGACTTCATGGAGAACATCTCATTGGGTGGCAAGACAAACTT 52009 Query 22908 CTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGG 22951 |||||| ||| |||| ||||| ||||| || || ||||| |||| Sbjct 52008 CTTCGAGAAACGAGTGGGTGAGTACCAGAAGGCTGGTGTCATGG 51965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303309681056660