Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq20 98.7 9e-16
seq96 87.8 2e-12
>seq20
Length=366416
Score = 98.7 bits (108), Expect = 9e-16
Identities = 138/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 24001 TTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCG 24060
|||| || || || || ||||| | |||||| |||| || || | || || ||||
Sbjct 156593 TTGTCAAGACTTTGACCGGAAAGACCATTACCCTCGAGGTGGAATCTTCTGATACTATCG 156534
Query 24061 AGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGA 24120
| | |||||| ||||||| ||||| |||||||| ||||| || || ||| | ||||
Sbjct 156533 ACAATGTCAAATCAAAGATTCAAGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTGA 156474
Query 24121 TTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAG 24180
||| || ||||| || | ||||| | | | | || |||||||||||| || || |
Sbjct 156473 TTTTCGCTGGCAAACAGTTGGAAGACGGCCGTACGCTCGCCGATTATAACATCCAGAAGG 156414
Query 24181 AATCTACAATTCAT 24194
| || ||| |||||
Sbjct 156413 AGTCCACACTTCAT 156400
>seq96
Length=87723
Score = 87.8 bits (96), Expect = 2e-12
Identities = 150/215 (70%), Gaps = 2/215 (1%)
Strand=Plus/Plus
Query 104592 GTATTCGCCTACTCGTTTTTCaaaaaaaTTAGTCTTGCCCTCCAGAGAAATATTATTCAT 104651
||| || || |||||||| || || || || |||||||| ||| || || || | |||
Sbjct 51984 GTACTCACCCACTCGTTTCTCGAAGAAGTTTGTCTTGCCACCCAATGAGATGTTCTCCAT 52043
Query 104652 AAATTCGAAAGGATTCAAAGTCTTAAAATATTTTTCGTAGCCAAGCTCGATCAACAGTCG 104711
|| || |||||||| ||||| | || || | ||||| | | | ||| ||
Sbjct 52044 GAAGTCAAAAGGATTAGCCGTCTTGTACACCTTCTCATTACCAAGAGCAACAAGCAGGCG 52103
Query 104712 ATCCGCCACAAATTCGATGTACTCGCACATAGAATGTG-CATTCATGCCCAGCATTGCGA 104770
||| || ||||| || ||||||| ||| |||||| |||||||||| || | ||
Sbjct 52104 ATCGGCTACAAACTCAATGTACTGTTTCATC-AATGTGGCATTCATGCCAAGTAGAGCAC 52162
Query 104771 CGGGTAAAGCGTTAGTaaaaaaaTCTTTCTCGATG 104805
|| ||||| | ||| | ||| ||||||||||||
Sbjct 52163 ATGGCAAAGCCTCAGTCAGAAACTCTTTCTCGATG 52197
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429922219207650
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |