Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq5 210 2e-49 seq13 131 2e-25 seq20 118 1e-21 >seq5 Length=693879 Score = 210 bits (232), Expect = 2e-49 Identities = 926/1442 (64%), Gaps = 39/1442 (3%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| ||||| || || || |||| ||||| || || | ||| |||||| | || Sbjct 202663 TTGACAACCTGGAATTCACCTGCCAGGACACGGCGTTGGTAAATGTTGGACGTGTAAGGC 202722 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || |||| || || || || || |||| ||| | || || |||||| || | | Sbjct 202723 TCGAAGCACTCATTGTTACCTAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGGGCGAGC 202782 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | ||| ||||| | || |||| |||||| | ||||| || || ||| ||||| Sbjct 202783 AGCAGTGAGTTGCGAATTCCATGCTCCTTGATCTGCTCCTTCAGACTATTCCACTCCCAG 202842 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || || ||| |||||||||||||||| |||| | |||||||||| |||||| | Sbjct 202843 AGGTCAGAAGGCTTCACGTCCCACATGTCAAACTGAAGAATGCCCTCGGAGGCGGGAGAG 202902 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTT--TTGGCGAGCTCGCAACTCGCCTCCAGAG 145355 || | ||||| | |||| | || | | ||||| | ||| | || || | Sbjct 202903 CCCTCAAAGGTAGAGTAA--GGTCCTTGCTCCTTGGCCAATTCGACAGAGGCAGTGAGGG 202960 Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGT 145415 | | || || ||||| || ||| |||||||| || ||| | ||| Sbjct 202961 CAGCATGGTAGATGGTCTCAAATATCTGCTTGTTGAGCTCACGGGCCTCAGGGGACTCAA 203020 Query 145416 ACGGCATGCGCA--GCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGG 145473 | |||||||||| ||| | ||||| |||||||| ||||| | || || || || || Sbjct 203021 ATGGCATGCGCAAGGCA--AGGAAAGCGTCGGCGAGACCCTGGACGCCAACACCAATCGG 203078 Query 145474 CCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAAT 145533 ||| ||| ||||||||| ||| ||| || || || || | || || || || Sbjct 203079 CCGGTGTCGCATGTTGCTGTTCCGGGCCTCCTGGACGGGGTAGTGGTTGACATCAATGAT 203138 Query 145534 TTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCG 145593 | | |||| ||| || || || |||| || | | | | ||| | ||||| | || Sbjct 203139 TCTGTTCAGGTTGCGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGCG 203198 Query 145594 AGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGT 145653 |||||| | | || || | | || | || ||||| || ||||| || Sbjct 203199 TCCCTCGTTGTAGTCTACGAAGGCAGGCAGAGCCAGAGAGGCCAAGTTGCAAACAGCGAC 203258 Query 145654 CTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCC 145713 ||| || | | | ||| | || || || | ||| | ||| | ||| ||||| Sbjct 203259 CTCATCAGGGGCAGAGTACTCGACAATTTCCGTGCAAAGGTTGGAGCTGCGGATTGTTCC 203318 Query 145714 CAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCC 145773 || || | ||| || || ||||||||||| || ||||||||||||||| | || || Sbjct 203319 CAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTAGAGCATGAAAGGATTACC 203378 Query 145774 AGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAG---TCCTGCGCACGCACCTGCT- 145829 ||||| ||| | ||||| ||| | || | || | ||| ||||| | || | Sbjct 203379 CGTCTCTGTCTGGGCCTCCAGGATGGA---GTACCAGAGCTTCTGGGCACGAA--TGGTC 203433 Query 145830 GCTGGTAGC-GGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAG 145888 || | | |||||| || || || ||||| |||||||| | |||||| Sbjct 203434 GCACGACCCTTGCCCTCACGCTCATACTTTTCATAGAGAGCCTCAAACTCCTCGCCGTAG 203493 Query 145889 CAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTG 145948 || || | ||||||||| || | |||||| |||||||| | ||| | ||||| | | Sbjct 203494 CAGTCAGCCAGGCCGGGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGTTCTTCTCG 203553 Query 145949 ACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCAA 146008 ||||||| ||| || | ||| || | ||| || || | || || || || | | Sbjct 203554 ACGCGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGC-ACGGAC 203612 Query 146009 TCCTCAGCACCCATGTTTCGCT-TCAAATTAAGCACACT-ATAGATGTCCGCGTGCCACG 146066 | || || || ||| | ||||| ||| | ||| | | | || |||||||| | Sbjct 203613 TTCTTCCTTGCCGTGATTCTTTCGCAAATCAAGGA-ACTCAAACACATCGGCGTGCCAAG 203671 Query 146067 GTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACGTGACGTA 146123 | || | || | ||| | || || ||| |||||||||||||| || | | Sbjct 203672 GCTCCAAGTAAATGGCAAAAGCGCCAGGTCGCTTGTTGCCACCCTGGTCGACATATCTGG 203731 Query 146124 CCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACG--CCGTTCGTAGA 146181 || ||||||| || || || | |||||| ||| || ||| ||| ||||| || Sbjct 203732 CCGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTGG--ACGTCCCGTTGGTGCC 203789 Query 146182 GTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCC-GCCGT 146240 | || || ||| || ||| | || || ||||||| ||||| ||| || ||| | Sbjct 203790 GGCAATGTAGGAGCCAGTGGCGCGAATGCGGTGGACATTCAAGCCGATACCACCAGCCAT 203849 Query 146241 ACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATC--GCT 146298 |||||| || ||||||| |||||| || |||||||| || ||||| || || Sbjct 203850 -CTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTCGATGCTGTCCTCCT 203908 Query 146299 TCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCAT--CGGCGTCCCCGCCGAGAAC 146356 || ||| ||| || ||||| || ||| || | ||| || || || || ||| Sbjct 203909 TC--ATGTCGACGAGGAAGCAAGACGACAGCT--GACATTGAGGTGTGCCAGCGTTGAAT 203964 Query 146357 AACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCG 146416 | || || ||||| || || | ||| | | ||| | | || ||||| | | Sbjct 203965 AGTGTGGGTGAGGCGTGTGTGAAGAGTTTGCTGGACATGAGATGGTAGGTTTCCAGGACT 204024 Query 146417 TCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGC 146476 | ||| | ||| || || || | |||||| ||||| | |||||| ||||| ||| Sbjct 204025 CGCTCAATATTGTCTCCCCAGATCCCGACAGCGACACGCATAATCATGTGCTGGGGTCGC 204084 Query 146477 TC 146478 || Sbjct 204085 TC 204086 >seq13 Length=451911 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||||| || || | ||| |||||| || |||||||| ||| | Sbjct 17275 CCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCC 17334 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| || |||| | ||||||||||| || ||| Sbjct 17335 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGG 17394 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| |||||| ||||| | || | || |||| ||||| | Sbjct 17395 ATGCCCTCCTTGTCCTGGATTTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 17454 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | || || || || || || || |||||||||||||| Sbjct 17455 TCGAGGGTGATCGTCTTCCCTGTGAGGGTCTTGACGAAAATCTGCAT 17501 >seq20 Length=366416 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||||||||| ||| || || | ||| |||||||| ||||||||||| || Sbjct 156148 GCCACCACGCAAACGCAACACCAAGTGCAAGGTTGACTCCTTCTGAATGTTGTAGTCTGC 156207 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||||| ||||| || || ||| |||| | |||||||||||| ||||| Sbjct 156208 AAGTGTCCGTCCATCCTCAAGCTGTTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGG 156267 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 || ||||||||||| ||| | | || ||| | | || | || || | || || | Sbjct 156268 AATGCCTTCTTTGTC-TTGAATCTTTGACTTCACGTTGTCTATTGTGTCAGAAGATTCCA 156326 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || ||||| |||||||| Sbjct 156327 CCTCAAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 156375 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | || ||||| | ||| | || || ||||| || |||||||| || Sbjct 156666 GCCACCACGGAGGCGGAGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCTGC 156725 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| |||||| |||||||| || || | || | |||||| ||||| ||||| Sbjct 156726 GAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGTCAGGAGG 156785 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||| || ||||| || || ||||| | || | || || | ||||||| Sbjct 156786 AATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCAGATGACTCGAC 156845 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | || | ||| || ||||| || ||||| |||||||||||||||||| Sbjct 156846 CTCAAGAGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATCTGCATGACT 156897 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || || || | ||| | || |||||||| || ||||| |||||| | || || | Sbjct 156389 CGGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTATAATCGGCGAGCGTACGGCCG 156448 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || | ||| ||||| ||| | || | |||||||||||| ||||| || ||||| ||| Sbjct 156449 TCTTCCAACTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTG 156508 Query 131140 TCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 || ||| | | || |||| | || | |||||| | || || | |||| ||||| Sbjct 156509 TC-TTGAATCTTTGATTTGACATTGTCGATAGTATCAGAAGATTCCACCTCGAGGGTAAT 156567 Query 131199 GGTTTTACCGGTTAGAGTTTTTAC 131222 ||| || ||||| | ||| || || Sbjct 156568 GGTCTTTCCGGTCAAAGTCTTGAC 156591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471997282579200