Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq13 105 5e-18
seq20 95.1 1e-14
>seq13
Length=451911
Score = 105 bits (116), Expect = 5e-18
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || || | ||| |||| ||||| ||| |||||| || |||||||||||||||
Sbjct 17275 CCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCC 17334
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | | ||||| | || ||||| ||| | || || ||||| ||||| ||
Sbjct 17335 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGG 17394
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| |||||| ||||| |||| ||| || | | | | |||||| | ||||
Sbjct 17395 ATGCCCTCCTTGTCCTGGATTTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 17454
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
|| | |||||| || || || || || || ||||| ||||||||||| |||
Sbjct 17455 TCGAGGGTGATCGTCTTCCCTGTGAGGGTCTTGACGAAAATCTGCATCTTG 17505
>seq20
Length=366416
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| || | ||| || || || ||||| || ||||||||||| || | ||| | |||||
Sbjct 156682 AGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGGCCGTCC 156741
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|| | || || || ||| |||| || ||||||||||| ||| | ||||| |||||
Sbjct 156742 TCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCC 156801
Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903
||| | ||| || | | | | ||||| | ||| || | ||||||||
Sbjct 156802 TGAATCTTGGACTTGACATTGTCGATGGTGTCAGATGACTCGACCTCAAGAGTGATGGTC 156861
Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| ||||| || |||||||| |||||||||||
Sbjct 156862 TTGCCGGTAAGGGTTTTGACGAAAATCTGCAT 156893
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 16727 ACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCC 16786
|||| |||| || |||||||| || ||||||||||| || | || | |||||
Sbjct 156167 ACCAAGTGCAAGGTTGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTCCGTCCATCCTCA 156226
Query 16787 AATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCA 16846
| ||||| || || | ||||| ||||| ||||| ||| | ||| |||||||| |
Sbjct 156227 AGCTGTTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCTTCTTTGTCTTGA 156286
Query 16847 ATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTT 16906
|| | |||||| | | | | ||||| | ||| || | ||||||||| |||
Sbjct 156287 ATCTTTGACTTCACGTTGTCTATTGTGTCAGAAGATTCCACCTCAAGGGTGATGGTCTTT 156346
Query 16907 CCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| || || || ||||| || ||||||||
Sbjct 156347 CCTGTGAGGGTCTTGACGAAGATCTGCAT 156375
Score = 84.2 bits (92), Expect = 2e-11
Identities = 142/204 (70%), Gaps = 4/204 (2%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| || | ||| || ||||||||||| || ||||| || ||||| | || | ||||
Sbjct 156392 AGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTATAATCGGCGAGCGTACGGCCGTCT 156451
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
||||| |||||||| || |||| || ||||| ||||| ||| | ||| || |||||
Sbjct 156452 TCCAACTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 156511
Query 16844 GCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| |||| | || || | | | | ||| || | ||| || | ||| ||||
Sbjct 156512 TGAATCTTTGAT--TTGACATTGTCGATAGTATCAGAAGATTCCACCTCGAGGGTAATGG 156569
Query 16902 TTTTTCCGGTCAGCGTTTTGACAA 16925
| |||||||||| || |||||||
Sbjct 156570 TCTTTCCGGTCAAAGTCTTGACAA 156593
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405075015663700
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |