Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq20 129 5e-25 >seq20 Length=366416 Score = 129 bits (142), Expect = 5e-25 Identities = 155/208 (75%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 25006 TATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTA 25065 || |||| |||||||||||||| || |||| || |||| ||||| || ||||| |||| Sbjct 156596 TAGTTGTCAAGACTTTGACCGGAAAGACCATTACCCTCGAGGTGGAATCTTCTGATACTA 156537 Query 25066 TCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGC 25122 |||| || || || |||| | ||| ||||| ||||| ||||| |||||||| |||| Sbjct 156536 TCGA--CAATGTCAAATCAAAGATTCA-AGACAAGGAAGGCATTCCTCCTGACCAGCAGC 156480 Query 25123 GGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTC 25182 | | ||||| || |||||||| || ||||| | || || | | |||||| || || | Sbjct 156479 GTCTGATTTTCGCTGGCAAACAGTTGGAAGACGGCCGTACGCTCGCCGATTATAACATCC 156420 Query 25183 AAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || ||||| || ||| | || || Sbjct 156419 AGAAGGAGTCCACACTTCATCTTGTTCT 156392 Score = 100 bits (110), Expect = 2e-16 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | ||||| || ||||||| | || || ||||| ||| Sbjct 156893 ATGCAGATTTTCGTCAAAACCCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCATCT 156834 Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || ||| | || | ||| ||||| || || ||||| |||||| Sbjct 156833 GACACCATCGA--CAATGTCAAGTCCAAGATTCAG-GACAAGGAGGGAATTCCTCCTGAC 156777 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | |||||||| || || || | || || | ||||| | | || ||| Sbjct 156776 CAACAGCGTCTGATTTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCGCAGACTAC 156717 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || ||| | ||||| Sbjct 156716 AACATCCAGAAGGAATCAACTCTCCATCTTGTGCT 156682 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || ||||| || ||| Sbjct 156375 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTTGAGGTGGAATCTTCT 156316 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || ||||| |||| | ||| ||||||||||| ||||| || ||||| Sbjct 156315 GACACAATAGACAACGTGAAGTCAAAGATTCAA-GACAAAGAAGGCATTCCTCCCGACCA 156257 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| |||| || ||||| ||||| | || |||| || || | | || ||||| Sbjct 156256 GCAGCGTCTTATCTTCGCCGGGAAACAGCTTGAGGATGGACGGACACTTGCAGACTACAA 156197 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTG 25208 ||||| || || || || | || || ||| Sbjct 156196 CATTCAGAAGGAGTCAACCTTGCACTTGGTG 156166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433314110483450