Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq96 132 5e-26 >seq96 Length=87723 Score = 132 bits (146), Expect = 5e-26 Identities = 202/287 (70%), Gaps = 3/287 (1%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || |||||||| ||||| || |||| || |||| ||||||||| || ||| Sbjct 52597 ATGTAGGTGTCGATTAAGAGAGAGTATGTTTCCGAGTGGATATTCTCCATCATGATCTGG 52656 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 |||||||| || || | ||| || | || || ||||| || | ||| || | Sbjct 52657 AATCCGTAAAAGCAACGAGCCTCAGGGACTTGGACTTCGCCGCTGAAGCGCTCAACCAAG 52716 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || || ||||| || || || || || ||||| || |||| || || || |||| | Sbjct 52717 TTCTCGTTGACAATGCCGTCAGAGGCAGCAAAGAATGCCAGAATGTGGGAGATGAAATAT 52776 Query 93542 TTCTCATCATCTTT---AAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598 |||||||| || || | | || | ||| ||| | |||||| || ||||||| ||| Sbjct 52777 TTCTCATCGTCATTCAGACGATTGTTCCAGTCGTGCAAATCTTTCGACAGATCGATCTCT 52836 Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 ||| | ||||| || || || || || ||||||||||| | ||| || Sbjct 52837 TCGGCCGTCCAGAAAGAAGCCTCGGCCTTTTTGTACATTTGCCAGAT 52883 Score = 96.9 bits (106), Expect = 4e-15 Identities = 214/315 (68%), Gaps = 6/315 (2%) Strand=Plus/Plus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985 ||| |||||||| || |||||||| |||||| |||||| || || ||| | || Sbjct 52104 ATCGGCTACAAACTCAATGTACTGTTTCATCAATGTGGCATTCATGCCAAGTAGA-GCAC 52162 Query 92986 A-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTA 93044 | || | ||| || |||| || ||||||||||| || || ||| | | || | | Sbjct 52163 ATGGCAAAGCCTCAGTCAGAAACTCTTTCTCGATGGTGACAGCATCTGTAATAATCTGTT 52222 Query 93045 TTACTCTACTATTTGGTGGTTTTTGTACGACA--TAATTGTACATTAAGCACGCAAAGTC 93102 | || || ||| ||| | || | || | | || || ||||| |||||||| Sbjct 52223 GGA-TCATCTGCTTGCTGGCTCG-GTGCTTCAAGTGAGAGTGCAGCAAGCAGGCAAAGTC 52280 Query 93103 GGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAG 93162 || || | ||| || || || || || || || ||| ||| || | ||| || | || Sbjct 52281 TGTGTGCAGACCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACCGGGCATCAA 52340 Query 93163 TCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCAC 93222 || || ||||| ||||| || || ||||||||| ||| || || ||||||||||| Sbjct 52341 GCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCTGAAGAAAATACCTTCCAC 52400 Query 93223 GGCTGCAAATGCCAC 93237 ||| ||||| || || Sbjct 52401 GGCAGCAAAAGCAAC 52415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556842493201200