Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq96 132 5e-26
>seq96
Length=87723
Score = 132 bits (146), Expect = 5e-26
Identities = 202/287 (70%), Gaps = 3/287 (1%)
Strand=Plus/Plus
Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421
||||| || |||||||| ||||| || |||| || |||| ||||||||| || |||
Sbjct 52597 ATGTAGGTGTCGATTAAGAGAGAGTATGTTTCCGAGTGGATATTCTCCATCATGATCTGG 52656
Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481
|||||||| || || | ||| || | || || ||||| || | ||| || |
Sbjct 52657 AATCCGTAAAAGCAACGAGCCTCAGGGACTTGGACTTCGCCGCTGAAGCGCTCAACCAAG 52716
Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541
|| || ||||| || || || || || ||||| || |||| || || || |||| |
Sbjct 52717 TTCTCGTTGACAATGCCGTCAGAGGCAGCAAAGAATGCCAGAATGTGGGAGATGAAATAT 52776
Query 93542 TTCTCATCATCTTT---AAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598
|||||||| || || | | || | ||| ||| | |||||| || ||||||| |||
Sbjct 52777 TTCTCATCGTCATTCAGACGATTGTTCCAGTCGTGCAAATCTTTCGACAGATCGATCTCT 52836
Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645
||| | ||||| || || || || || ||||||||||| | ||| ||
Sbjct 52837 TCGGCCGTCCAGAAAGAAGCCTCGGCCTTTTTGTACATTTGCCAGAT 52883
Score = 96.9 bits (106), Expect = 4e-15
Identities = 214/315 (68%), Gaps = 6/315 (2%)
Strand=Plus/Plus
Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985
||| |||||||| || |||||||| |||||| |||||| || || ||| | ||
Sbjct 52104 ATCGGCTACAAACTCAATGTACTGTTTCATCAATGTGGCATTCATGCCAAGTAGA-GCAC 52162
Query 92986 A-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTA 93044
| || | ||| || |||| || ||||||||||| || || ||| | | || | |
Sbjct 52163 ATGGCAAAGCCTCAGTCAGAAACTCTTTCTCGATGGTGACAGCATCTGTAATAATCTGTT 52222
Query 93045 TTACTCTACTATTTGGTGGTTTTTGTACGACA--TAATTGTACATTAAGCACGCAAAGTC 93102
| || || ||| ||| | || | || | | || || ||||| ||||||||
Sbjct 52223 GGA-TCATCTGCTTGCTGGCTCG-GTGCTTCAAGTGAGAGTGCAGCAAGCAGGCAAAGTC 52280
Query 93103 GGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAG 93162
|| || | ||| || || || || || || || ||| ||| || | ||| || | ||
Sbjct 52281 TGTGTGCAGACCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACCGGGCATCAA 52340
Query 93163 TCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCAC 93222
|| || ||||| ||||| || || ||||||||| ||| || || |||||||||||
Sbjct 52341 GCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCTGAAGAAAATACCTTCCAC 52400
Query 93223 GGCTGCAAATGCCAC 93237
||| ||||| || ||
Sbjct 52401 GGCAGCAAAAGCAAC 52415
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556842493201200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |