Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq20 125 6e-24
seq13 120 3e-22
seq4 82.4 6e-11
>seq20
Length=366416
Score = 125 bits (138), Expect = 6e-24
Identities = 146/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| || ||||| | ||||| || || |||||||||| || || | |
Sbjct 156893 ATGCAGATTTTCGTCAAAACCCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCATCT 156834
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| || |||| || ||||| ||||||||||| ||||| || || |||
Sbjct 156833 GACACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCTGACCAA 156774
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| || ||||| || || ||| | ||||| ||||||| || | || ||||||
Sbjct 156773 CAGCGTCTGATTTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCGCAGACTACAAC 156714
Query 22399 ATTCAAAAAGAATCCAC 22415
|| || || ||||| ||
Sbjct 156713 ATCCAGAAGGAATCAAC 156697
Score = 123 bits (136), Expect = 2e-23
Identities = 158/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 22229 TTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGG 22288
|||| || ||||| ||||| || || | || || || |||||| | | ||||| | |
Sbjct 156593 TTGTCAAGACTTTGACCGGAAAGACCATTACCCTCGAGGTGGAATCTTCTGATACTATCG 156534
Query 22289 ACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTA 22348
|| || ||||| ||| |||||||||||||| || ||||| || || || || ||||| |
Sbjct 156533 ACAATGTCAAATCAAAGATTCAAGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTGA 156474
Query 22349 TATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAG 22408
| || || ||||||||||| || || ||| || || ||||||| ||||| || || |
Sbjct 156473 TTTTCGCTGGCAAACAGTTGGAAGACGGCCGTACGCTCGCCGATTATAACATCCAGAAGG 156414
Query 22409 AATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
| ||||| | ||| | ||| | || | || || |||
Sbjct 156413 AGTCCACACTTCATCTTGTTCTCCGCCTCCGTGGCGGT 156376
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | || || || || |||| ||||| |||||| | |
Sbjct 156375 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTTGAGGTGGAATCTTCT 156316
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| | | || ||| ||||||||||| || || ||||| ||||| ||
Sbjct 156315 GACACAATAGACAACGTGAAGTCAAAGATTCAAGACAAAGAAGGCATTCCTCCCGACCAG 156256
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| |||||||| || ||||| |||||| | |||||| || || | | || ||||||
Sbjct 156255 CAGCGTCTTATCTTCGCCGGGAAACAGCTTGAGGATGGACGGACACTTGCAGACTACAAC 156196
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
||||| || || || ||| | || || || ||||| ||||| || ||
Sbjct 156195 ATTCAGAAGGAGTCAACCTTGCACTTGGTGTTGCGTTTGCGTGGTGG 156149
>seq13
Length=451911
Score = 120 bits (132), Expect = 3e-22
Identities = 165/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|||||||| ||||| || || || | || || || ||| |||| || || ||||| |
Sbjct 17504 AAGATGCAGATTTTCGTCAAGACCCTCACAGGGAAGACGATCACCCTCGAGGTGGAGTCT 17445
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
|||| ||| | ||| | |||| ||||| || ||||||||||| || || || ||
Sbjct 17444 TCCGACACCATCGACAACGTCAAGTCCAAAATCCAGGACAAGGAGGGCATCCCCCCAGAC 17385
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| || || || || ||||| ||||| ||| | |||||| ||||||| | |||| |||
Sbjct 17384 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCCGACTAC 17325
Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
||||| || || || |||| | || || || |||| |||| || |||
Sbjct 17324 AACATCCAGAAGGAGAGCACCCTGCACTTGGTGCTGCGCCTGCGTGGTGGT 17274
>seq4
Length=697727
Score = 82.4 bits (90), Expect = 6e-11
Identities = 128/183 (70%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 22224 AATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATAC 22283
|| ||| || || || || || ||||| || |||| || || || || || | || ||
Sbjct 592120 AAGTTTCGTCAAGACCTTGACGGGTAAGACCATCACCCTAGAGGTCGAGTCCTCTGACAC 592179
Query 22284 CGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACG 22343
| ||| || ||||| || || || || |||||||||||||| || || || || ||
Sbjct 592180 AATCGACAATGTCAAATCCAAGATACAGGATAAGGAGGGTATTCCCCCTGACCAGCAGCG 592239
Query 22344 TCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCA 22403
| || ||||| ||||| ||| | |||||| ||| ||| | | || ||||| || ||
Sbjct 592240 ATTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTGGCAGACTACAATATCCA 592299
Query 22404 AAA 22406
||
Sbjct 592300 GAA 592302
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419714546405950
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |