Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq61 114 3e-20 seq18 89.7 1e-12 >seq61 Length=153503 Score = 114 bits (126), Expect = 3e-20 Identities = 432/670 (64%), Gaps = 7/670 (1%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || ||||| |||| |||||||||||||||||||| || || |||||||||| || Sbjct 44705 GTCGGTTCCTTGTCCGGTGGTTGGAAGATGAAGCTTGCTCTGGCTCGCGCCATGCTCAAA 44764 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 || ||||| || ||||| || || || ||||| || ||||| ||||||| | || Sbjct 44765 AAAGCAGATGTGCTTCTGCTGGACGAACCTACCAATCATCTGGACGTCACCAACATTGCT 44824 Query 279816 TGGCTAGTGTCCTACCTAACCAGTC-TGAAGAATGTTTCTTCCCTCATTGTCTCTCACGA 279874 ||||||| | ||||| | | || | || | | || | || ||||| ||||| Sbjct 44825 TGGCTAGAGAATTACCTCAAGACTCATCCAG-ACATCACTAGTTTGATCGTCTCCCACGA 44883 Query 279875 CTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCT 279934 || || ||||| ||| || | | | ||| ||||| || | || |||| | Sbjct 44884 TTCCGGTTTCCTGGATAATGTCACCACGGATATCTACCACTACGAACCTAACAAGAAGTT 44943 Query 279935 CTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTA 279994 || ||| ||||||||| |||||||||||| || ||||| || ||||| Sbjct 44944 GGCCTGCTACAAGGGCAACCTGGCTGCTTTCGTGGAGCTCCGGCCTGAAGCCAAGGCCTA 45003 Query 279995 CTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGG 280054 |||| |||| | | ||| || | | | | || ||| || || |||| ||| Sbjct 45004 CTATACCCTGTCTGCCTCCAACGTCCAATTCAAGTTTCCTCCTCCCGGTATTCTTACGGG 45063 Query 280055 CATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAA 280114 | ||| ||| | ||||| ||||| | | ||||||| | || ||||| Sbjct 45064 CGTCAAGTCACTGACCCGCGCCATCATTCGCATGAGCAATGTCTCCTACACCTACCCCAA 45123 Query 280115 TGGCCCCAA--CAT-CTTCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCACGGATTGG 280171 | |||| ||| | | | |||| || ||| | || | || || | | Sbjct 45124 AGCAACCAAGCCATCCCTGTCCGATGTCTCCTGCCAGCTGTCGCTCTCATCTCGTGTGGC 45183 Query 280172 TGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGAC 280231 ||||||| ||||| |||||||| |||||||| || ||||| | || || ||||| | Sbjct 45184 CATCATTGGTCCCAACGGTGCGGGCAAGTCTACGCTCATCAAGCTACTCACCGGCGA-AG 45242 Query 280232 CCAGGCCACTGAGGGGTCCGTTTG-GAAGCATCCCAACATGCGGATGGCTTACGTCGCTC 280290 || || | || | ||| |||||| || || |||| || | ||| | | Sbjct 45243 TCATTCCCTCCACCGGCAAGGTTGAGAAGCACCCTAATCTGCGTATCGGCTACATTAAGC 45302 Query 280291 AGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGT 280350 ||||||| | | ||| | |||| ||||| || | ||| || ||||| ||| | |||| Sbjct 45303 AGCACGCGCTAGAGCACGTGGAGATGCACCTTGAAAAGACACCCAACCAGTACCTCCAGT 45362 Query 280351 GGCGCTATGC 280360 |||| ||||| Sbjct 45363 GGCGGTATGC 45372 >seq18 Length=380631 Score = 89.7 bits (98), Expect = 1e-12 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232 |||||||||||||| || || || ||||| || || ||||| || ||||||| ||| | Sbjct 83855 GTCATTGGACCCAACGGCGCTGGAAAGTCCACTCTTATCAACGTTTTGACTGGTGAG-CT 83797 Query 280233 CAGGCC-ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCA 280291 || || || ||||| | | |||| ||||| || || || ||| | || Sbjct 83796 CATTCCTACCGAGGGTGAGATATATCAGCACGAGAACATCCGTATCGCCTACATTAAGCA 83737 Query 280292 GCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTG 280351 |||||| ||| || ||||| |||||||||||| |||||| | | ||||||||||| Sbjct 83736 GCACGCCTTCGCTCATATCGATAACCACCTGGACTCAACTCCTTCCGAGTACATTCAGTG 83677 Query 280352 GCG 280354 ||| Sbjct 83676 GCG 83674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027802165111830