Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq61 114 3e-20
seq18 89.7 1e-12
>seq61
Length=153503
Score = 114 bits (126), Expect = 3e-20
Identities = 432/670 (64%), Gaps = 7/670 (1%)
Strand=Plus/Plus
Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755
|| ||||| |||| |||||||||||||||||||| || || |||||||||| ||
Sbjct 44705 GTCGGTTCCTTGTCCGGTGGTTGGAAGATGAAGCTTGCTCTGGCTCGCGCCATGCTCAAA 44764
Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815
|| ||||| || ||||| || || || ||||| || ||||| ||||||| | ||
Sbjct 44765 AAAGCAGATGTGCTTCTGCTGGACGAACCTACCAATCATCTGGACGTCACCAACATTGCT 44824
Query 279816 TGGCTAGTGTCCTACCTAACCAGTC-TGAAGAATGTTTCTTCCCTCATTGTCTCTCACGA 279874
||||||| | ||||| | | || | || | | || | || ||||| |||||
Sbjct 44825 TGGCTAGAGAATTACCTCAAGACTCATCCAG-ACATCACTAGTTTGATCGTCTCCCACGA 44883
Query 279875 CTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCT 279934
|| || ||||| ||| || | | | ||| ||||| || | || |||| |
Sbjct 44884 TTCCGGTTTCCTGGATAATGTCACCACGGATATCTACCACTACGAACCTAACAAGAAGTT 44943
Query 279935 CTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTA 279994
|| ||| ||||||||| |||||||||||| || ||||| || |||||
Sbjct 44944 GGCCTGCTACAAGGGCAACCTGGCTGCTTTCGTGGAGCTCCGGCCTGAAGCCAAGGCCTA 45003
Query 279995 CTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGG 280054
|||| |||| | | ||| || | | | | || ||| || || |||| |||
Sbjct 45004 CTATACCCTGTCTGCCTCCAACGTCCAATTCAAGTTTCCTCCTCCCGGTATTCTTACGGG 45063
Query 280055 CATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAA 280114
| ||| ||| | ||||| ||||| | | ||||||| | || |||||
Sbjct 45064 CGTCAAGTCACTGACCCGCGCCATCATTCGCATGAGCAATGTCTCCTACACCTACCCCAA 45123
Query 280115 TGGCCCCAA--CAT-CTTCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCACGGATTGG 280171
| |||| ||| | | | |||| || ||| | || | || || | |
Sbjct 45124 AGCAACCAAGCCATCCCTGTCCGATGTCTCCTGCCAGCTGTCGCTCTCATCTCGTGTGGC 45183
Query 280172 TGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGAC 280231
||||||| ||||| |||||||| |||||||| || ||||| | || || ||||| |
Sbjct 45184 CATCATTGGTCCCAACGGTGCGGGCAAGTCTACGCTCATCAAGCTACTCACCGGCGA-AG 45242
Query 280232 CCAGGCCACTGAGGGGTCCGTTTG-GAAGCATCCCAACATGCGGATGGCTTACGTCGCTC 280290
|| || | || | ||| |||||| || || |||| || | ||| | |
Sbjct 45243 TCATTCCCTCCACCGGCAAGGTTGAGAAGCACCCTAATCTGCGTATCGGCTACATTAAGC 45302
Query 280291 AGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGT 280350
||||||| | | ||| | |||| ||||| || | ||| || ||||| ||| | ||||
Sbjct 45303 AGCACGCGCTAGAGCACGTGGAGATGCACCTTGAAAAGACACCCAACCAGTACCTCCAGT 45362
Query 280351 GGCGCTATGC 280360
|||| |||||
Sbjct 45363 GGCGGTATGC 45372
>seq18
Length=380631
Score = 89.7 bits (98), Expect = 1e-12
Identities = 131/183 (72%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232
|||||||||||||| || || || ||||| || || ||||| || ||||||| ||| |
Sbjct 83855 GTCATTGGACCCAACGGCGCTGGAAAGTCCACTCTTATCAACGTTTTGACTGGTGAG-CT 83797
Query 280233 CAGGCC-ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCA 280291
|| || || ||||| | | |||| ||||| || || || ||| | ||
Sbjct 83796 CATTCCTACCGAGGGTGAGATATATCAGCACGAGAACATCCGTATCGCCTACATTAAGCA 83737
Query 280292 GCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTG 280351
|||||| ||| || ||||| |||||||||||| |||||| | | |||||||||||
Sbjct 83736 GCACGCCTTCGCTCATATCGATAACCACCTGGACTCAACTCCTTCCGAGTACATTCAGTG 83677
Query 280352 GCG 280354
|||
Sbjct 83676 GCG 83674
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027802165111830
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |