Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq20 190 4e-43 seq13 167 4e-36 seq61 105 1e-17 seq4 98.7 2e-15 >seq20 Length=366416 Score = 190 bits (210), Expect = 4e-43 Identities = 171/215 (80%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 ||||| |||||||| | || ||||| || || ||||| || || | ||||||| ||| Sbjct 156161 CGCAACACCAAGTGCAAGGTTGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTCCGTCCA 156220 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 || || | ||| ||||||||||| || || | || |||||||| ||||||||||| ||| Sbjct 156221 TCCTCAAGCTGTTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCTTCTTTG 156280 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 ||||||||||||| ||| ||| || || ||||| | ||||| || || | ||||||| Sbjct 156281 TCTTGAATCTTTGACTTCACGTTGTCTATTGTGTCAGAAGATTCCACCTCAAGGGTGATG 156340 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||| ||||||||||||||||| |||||||| Sbjct 156341 GTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 156375 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | || || |||||||| || |||||||||||||||| | Sbjct 156377 CCGCCACGGAGGCGGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTATAATCGGCG 156436 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| ||||| || || ||||| || || | || ||||| || ||| Sbjct 156437 AGCGTACGGCCGTCTTCCAACTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGA 156496 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||||||||||| ||||| ||||| || || | ||||| || Sbjct 156497 ATGCCTTCCTTGTCTTGAATCTTTGATTTGACATTGTCGATAGTATCAGAAGATTCCACC 156556 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449 || | ||| ||||| ||||| || | |||||||| Sbjct 156557 TCGAGGGTAATGGTCTTTCCGGTCAAAGTCTTGAC 156591 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | || || || || || || |||||||| || || | | Sbjct 156667 CCACCACGGAGGCGGAGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCTGCG 156726 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || || || | |||||||| || ||| Sbjct 156727 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGTCAGGAGGA 156786 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | |||||| ||||||||||| | ||| || || Sbjct 156787 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCAGATGACTCGACC 156846 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || || ||||| |||||||| |||||||| Sbjct 156847 TCAAGAGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATCTGCAT 156893 >seq13 Length=451911 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||||||| || ||| ||| || |||||||| || |||| Sbjct 17275 CCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCC 17334 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || ||||||| || ||||| || || Sbjct 17335 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGG 17394 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || || || | ||||||| ||||||||||| | || || || Sbjct 17395 ATGCCCTCCTTGTCCTGGATTTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 17454 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || || ||||||||||||||||| |||||||| Sbjct 17455 TCGAGGGTGATCGTCTTCCCTGTGAGGGTCTTGACGAAAATCTGCAT 17501 >seq61 Length=153503 Score = 105 bits (116), Expect = 1e-17 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 224974 GGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTG 225033 ||||||||||||||||| |||||||||||| ||| | || ||||| |||| | || | Sbjct 45373 GGCATACCGCCACTGGAGGTACTGGTTGGGTGTCTTTTCAAGGTGCATCTCCACGTGCTC 45314 Query 225034 GAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCG 225093 | || ||||| | ||| | || |||| || || |||||| || ||| | Sbjct 45313 TAGCGCGTGCTGCTTAATGTAGCCGATACGCAGATTAGGGTGCTTCTCAACCTTGCCG-G 45255 Query 225094 AGTCGGTTGTGCCT-CGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGG 225152 | || || || |||||||||| | |||||||||||||| |||||||||||| |||| Sbjct 45254 TGGAGGGAATGACTTCGCCGGTGAGTAGCTTGATGAGCGTAGACTTGCCCGCACCGTTGG 45195 Query 225153 GGCCAATCACGCCAATCCGGGATGA 225177 | ||||| | | | | || ||||| Sbjct 45194 GACCAATGATGGCCACACGAGATGA 45170 Score = 93.3 bits (102), Expect = 8e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 225515 AGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCA 225574 ||||| || | |||| ||||||||| || || |||||||||||||| || || | || Sbjct 44829 AGCCAAGCAATGTTGGTGACGTCCAGATGATTGGTAGGTTCGTCCAGCAGAAGCACATCT 44770 Query 225575 GCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAG 225634 || | |||| |||||||| | |||| |||||||| ||||| || ||||||| ||| Sbjct 44769 GCTTTTTTGAGCATGGCGCGAGCCAGAGCAAGCTTCATCTTCCAACCACCGGACAAGGAA 44710 Query 225635 CCGA 225638 |||| Sbjct 44709 CCGA 44706 >seq4 Length=697727 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || ||||| || || || | || || | ||||| || | |||||| || || || || Sbjct 592302 TTCTGGATATTGTAGTCTGCCAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 592243 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || || ||||| || ||||| || ||||| || || ||||| | ||||| ||| Sbjct 592242 AATCGCTGCTGGTCAGGGGGAATACCCTCCTTATCCTGTATCTTGGATTTGACATTGTCG 592183 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || ||||| | || || || || | ||||||||| || ||||| | |||||||||||| Sbjct 592182 ATTGTGTCAGAGGACTCGACCTCTAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAA 592124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921592101663600