Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq5 271 1e-67 seq96 134 3e-26 >seq5 Length=693879 Score = 271 bits (300), Expect = 1e-67 Identities = 889/1359 (65%), Gaps = 43/1359 (3%) Strand=Plus/Plus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| || || || | ||| || ||||| ||||| | |||| || || Sbjct 202662 GTTGACAACCTGGAATTCACCTGCCAGGACACGGCGTTGGTAAATGTTGGACGTGTAAGG 202721 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||| |||| || || ||||| | || || || |||||||| | | Sbjct 202722 CTCGAAGCACTCATTGTTACCTAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGGGCGAG 202781 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGAT--GCGGAGTCTGAGCTCGTTCCAGTCC 244267 |||||| ||| | | || ||| || ||| || || || || ||||| ||| Sbjct 202782 CAGCAGTGAGTTGCGAATTCCATGCTCCTTGATCTGCTCCTTCAGA-CTA-TTCCACTCC 202839 Query 244268 CACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTG 244327 || | | | || ||| | || ||| |||||||||||||||| || | |||| | Sbjct 202840 CAGAGGTCAGA-AGG-CTTCACGT-------CCCACATGTCAAACTGAAGAATGCCCTCG 202890 Query 244328 CTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCT 244386 | |||| |||||| |||| | ||| || || | || ||||| | |||| Sbjct 202891 GAGGCGGGAGAGCCCTCAAAGGTAGAGTAAGGTCCTTGCTCCTTGGCCAATTCGACAGAG 202950 Query 244387 CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT 244446 || |||||| || | |||||||||||| || ||| |||||| | || ||||||| Sbjct 202951 GCAGT-GAGGGCAGCATGGTAGATGGTCTCAAATATCTGCTTGTTGAGCTCACGGGCCTC 203009 Query 244447 GCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGAT 244506 | | || || |||| || | ||| ||||||| || ||||| ||||| | Sbjct 203010 AGGGGACTCAAATGGCATGCGCAAGGCAAGGAAAGCGTCGGCGAGACCCTGGACGCCAAC 203069 Query 244507 GCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCC 244566 || || || | ||||||| ||||| | | ||| || | |||||||| |||| | Sbjct 203070 ACCAATCGGCCGGTGTCGCATGTTGCTGTTCCGGGCCTCCTGGACGGGGTAGTGGTTGAC 203129 Query 244567 GTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAA 244626 || || | |||| |||||||| | | || ||| ||| ||| ||| || Sbjct 203130 ATCAATGATTCTGTTCAGGTTGCGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAA 203189 Query 244627 GTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCT 244686 |||||| ||| ||||| | | || || || || | || || | Sbjct 203190 GTCGTAG-CGTC-----CCTCGTTG-TAGT----CT-ACGAAGGCAGGCAGAGCCAGAGA 203237 Query 244687 GGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAG 244746 ||||| |||||| || || ||||| || | | | ||||| |||||| || ||||| || Sbjct 203238 GGCCAAGTTGCAAACAGCGACCTCATCAGGGGCAGAGTACTCGACAATTTCCGTGCAAAG 203297 Query 244747 GTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTT 244806 ||| || ||| || |||| || || || ||| ||| ||||||||| ||||| Sbjct 203298 GTTGGAGCTGCGGATTGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTT 203357 Query 244807 GTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTC 244866 |||||||||||| || || ||||| |||||| | |||| | || |||||| | Sbjct 203358 GTAGAGCATGAAAGGATTACCCGTCTCTGTCTGGGCCTCCAGGATGGAGTACCAGAGCTT 203417 Query 244867 CCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTC 244926 | || | ||| ||| |||||||||| ||| || || || ||||| Sbjct 203418 CTGGGCACGAATGGTCGCACGACCCTTGCCCTCACGCTCATACTTTTCATAGAGAGCCTC 203477 Query 244927 GAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA--CGACGCCGGGCACATGAGACTC 244984 ||||| ||| || || | ||||||||||| || | |||||||| ||| || Sbjct 203478 AAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCATTCGTTG--GGGCACATCAGAGTC 203535 Query 244985 CACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAG 245044 || || ||| | || ||| | || |||||| || ||||| ||||| || || |||| Sbjct 203536 CAATCACCGTTCTTCTCGACGCGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAAT 203595 Query 245045 AGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTG-TTCTTCCTCAGCTCCAAAAAGTCAAA 245103 | || | | | || ||| ||| ||| ||||| | || || | || ||||| Sbjct 203596 AAATCACGAGCACGGACTTCTTCCTTGCC-GTGATTCTTTCGCAAATCAAGGAACTCAAA 203654 Query 245104 GACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCC 245163 || ||| ||||||| ||||||| ||| | || | ||||| || ||||||||||| || Sbjct 203655 CACATCGGCGTGCCAAGGCTCCAAGTAAATGGCAAAAGCGCCAGGTCGCTTGTTGCCACC 203714 Query 245164 CTGGTCCAC-CATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAG 245222 |||||| || ||| || | |||||| | || || | || | | || || | Sbjct 203715 CTGGTCGACATATCTGGCCGTG-TTGTTGAAAACACGAAGCATGGGAATGACACCATTGG 203773 Query 245223 AGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT-- 245280 | ||||||||||| ||||||| ||| || | | | ||| | ||||||| Sbjct 203774 ACGTCCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGC---GCGAATGC-GGTGGACATTC 203829 Query 245281 --GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATG 245338 ||| | || || || ||||||||| | ||||||| |||||| ||||| ||| Sbjct 203830 AAGCCGATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATG 203889 Query 245339 CCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGG 245398 ||||| ||||||||| |||||||| || || ||||| || |||||||| | || Sbjct 203890 CCCTCGATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGACGACAGCTGACATTGAGGT 203949 Query 245399 CTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 ||| | |||||| || ||||| |||||| || ||| Sbjct 203950 GTGCCAGCGTTGAATAGTGTGGGTGAGGCGTGTGTGAAG 203988 >seq96 Length=87723 Score = 134 bits (148), Expect = 3e-26 Identities = 311/458 (68%), Gaps = 13/458 (3%) Strand=Plus/Minus Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 |||| | || | |||| || ||| | ||||| || || || |||||| || || || Sbjct 52430 TTCGCCCAGCGCTTGGTTGCTTTTGCTGCCGTGGAAGGTATTTTCTTCAGCGGTGCTTTT 52371 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAA 42812 || || ||||||||||| ||| || | | ||||||||| ||||||||||| |||||| Sbjct 52370 GCTTCTATCTTCTGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAA 52311 Query 42813 CTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCAC 42872 | ||| | || ||||| ||||| | |||||||||||| | ||| ||| ||| Sbjct 52310 TTAATCTCGCGTGATGAGGGTCTGCACACAGACTTTGCCTGCTTGCTGCACTC---TCAC 52254 Query 42873 CTCAGGCA-CAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGAT 42931 | | ||| | |||| | ||| || | ||| || || || || || || || Sbjct 52253 TTGAAGCACCGAGCCAGC-AAGCAGATGATCCAACAGATTATTACAGATGCTGTCACCAT 52195 Query 42932 CGAGAAGGAGTTCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAA--CCACGA 42988 |||||| ||||| || || || | |||| ||| | || | |||||||| |||| Sbjct 52194 CGAGAAAGAGTTTCTGACTGAGGCTTTGCCATGTG-CTCTACTTGGCATGAATGCCAC-- 52138 Query 42989 CCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCT-CCTGTGCCAGATGGGTCTCA 43047 | ||| ||||||| ||| || ||||| | || | ||| | ||| | | Sbjct 52137 ATTGATGAAACAGTACATTGAGTTTGTAGCCGATCGCCTGCTTGTTGCTCTTGGTAATGA 52078 Query 43048 GCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCA 43107 | | | ||||| ||| | || || ||||| |||||||||||||| |||| |||| Sbjct 52077 GAAG-GTGTACAAGACGGCTAATCCTTTTGACTTCATGGAGAACATCTCATTGGGTGGCA 52019 Query 43108 AGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||| ||||| |||||||| || || | || |||||| Sbjct 52018 AGACAAACTTCTTCGAGAAACGAGTGGGTGAGTACCAG 51981 Score = 86.0 bits (94), Expect = 1e-11 Identities = 177/259 (68%), Gaps = 7/259 (3%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||| ||||| || || |||||| ||||| ||||| || ||| Sbjct 52883 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCTTTCTGGACGGCCGAAGAGATCGATCTG 52824 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACT-GTCTGA--GA--ACGAAAAGTTTTTCCTCA 42414 | || || | || |||| | || | |||||| || | || || | |||| || Sbjct 52823 TCGAAAGATTTGCACGACTGGAA--CAATCGTCTGAATGACGATGAGAAATATTTCATCT 52766 Query 42415 AAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCA 42474 |||| ||||| ||||| || |||||||||||||| ||||| |||||| ||| Sbjct 52765 CCCACATTCTGGCATTCTTTGCTGCCTCTGACGGCATTGTCAACGAGAACTTGGTTGAGC 52706 Query 42475 GGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCA 42534 | |||| || || || | |||||| || ||||| ||||| |||||||| | Sbjct 52705 GCTTCAGCGGCGAAGTCCAAGTCCCTGAGGCTCGTTGCTTTTACGGATTCCAGATCATGA 52646 Query 42535 TAGAGAACGTGCACTCTGA 42553 | ||||| | ||||| || Sbjct 52645 TGGAGAATATCCACTCGGA 52627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944308154848800