Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq5 271 1e-67
seq96 134 3e-26
>seq5
Length=693879
Score = 271 bits (300), Expect = 1e-67
Identities = 889/1359 (65%), Gaps = 43/1359 (3%)
Strand=Plus/Plus
Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149
||| || ||||| || || || | ||| || ||||| ||||| | |||| || ||
Sbjct 202662 GTTGACAACCTGGAATTCACCTGCCAGGACACGGCGTTGGTAAATGTTGGACGTGTAAGG 202721
Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209
||||| || ||| |||| || || ||||| | || || || |||||||| | |
Sbjct 202722 CTCGAAGCACTCATTGTTACCTAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGGGCGAG 202781
Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGAT--GCGGAGTCTGAGCTCGTTCCAGTCC 244267
|||||| ||| | | || ||| || ||| || || || || ||||| |||
Sbjct 202782 CAGCAGTGAGTTGCGAATTCCATGCTCCTTGATCTGCTCCTTCAGA-CTA-TTCCACTCC 202839
Query 244268 CACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTG 244327
|| | | | || ||| | || ||| |||||||||||||||| || | |||| |
Sbjct 202840 CAGAGGTCAGA-AGG-CTTCACGT-------CCCACATGTCAAACTGAAGAATGCCCTCG 202890
Query 244328 CTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCT 244386
| |||| |||||| |||| | ||| || || | || ||||| | ||||
Sbjct 202891 GAGGCGGGAGAGCCCTCAAAGGTAGAGTAAGGTCCTTGCTCCTTGGCCAATTCGACAGAG 202950
Query 244387 CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT 244446
|| |||||| || | |||||||||||| || ||| |||||| | || |||||||
Sbjct 202951 GCAGT-GAGGGCAGCATGGTAGATGGTCTCAAATATCTGCTTGTTGAGCTCACGGGCCTC 203009
Query 244447 GCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGAT 244506
| | || || |||| || | ||| ||||||| || ||||| ||||| |
Sbjct 203010 AGGGGACTCAAATGGCATGCGCAAGGCAAGGAAAGCGTCGGCGAGACCCTGGACGCCAAC 203069
Query 244507 GCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCC 244566
|| || || | ||||||| ||||| | | ||| || | |||||||| |||| |
Sbjct 203070 ACCAATCGGCCGGTGTCGCATGTTGCTGTTCCGGGCCTCCTGGACGGGGTAGTGGTTGAC 203129
Query 244567 GTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAA 244626
|| || | |||| |||||||| | | || ||| ||| ||| ||| ||
Sbjct 203130 ATCAATGATTCTGTTCAGGTTGCGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAA 203189
Query 244627 GTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCT 244686
|||||| ||| ||||| | | || || || || | || || |
Sbjct 203190 GTCGTAG-CGTC-----CCTCGTTG-TAGT----CT-ACGAAGGCAGGCAGAGCCAGAGA 203237
Query 244687 GGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAG 244746
||||| |||||| || || ||||| || | | | ||||| |||||| || ||||| ||
Sbjct 203238 GGCCAAGTTGCAAACAGCGACCTCATCAGGGGCAGAGTACTCGACAATTTCCGTGCAAAG 203297
Query 244747 GTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTT 244806
||| || ||| || |||| || || || ||| ||| ||||||||| |||||
Sbjct 203298 GTTGGAGCTGCGGATTGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTT 203357
Query 244807 GTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTC 244866
|||||||||||| || || ||||| |||||| | |||| | || |||||| |
Sbjct 203358 GTAGAGCATGAAAGGATTACCCGTCTCTGTCTGGGCCTCCAGGATGGAGTACCAGAGCTT 203417
Query 244867 CCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTC 244926
| || | ||| ||| |||||||||| ||| || || || |||||
Sbjct 203418 CTGGGCACGAATGGTCGCACGACCCTTGCCCTCACGCTCATACTTTTCATAGAGAGCCTC 203477
Query 244927 GAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA--CGACGCCGGGCACATGAGACTC 244984
||||| ||| || || | ||||||||||| || | |||||||| ||| ||
Sbjct 203478 AAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCATTCGTTG--GGGCACATCAGAGTC 203535
Query 244985 CACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAG 245044
|| || ||| | || ||| | || |||||| || ||||| ||||| || || ||||
Sbjct 203536 CAATCACCGTTCTTCTCGACGCGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAAT 203595
Query 245045 AGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTG-TTCTTCCTCAGCTCCAAAAAGTCAAA 245103
| || | | | || ||| ||| ||| ||||| | || || | || |||||
Sbjct 203596 AAATCACGAGCACGGACTTCTTCCTTGCC-GTGATTCTTTCGCAAATCAAGGAACTCAAA 203654
Query 245104 GACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCC 245163
|| ||| ||||||| ||||||| ||| | || | ||||| || ||||||||||| ||
Sbjct 203655 CACATCGGCGTGCCAAGGCTCCAAGTAAATGGCAAAAGCGCCAGGTCGCTTGTTGCCACC 203714
Query 245164 CTGGTCCAC-CATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAG 245222
|||||| || ||| || | |||||| | || || | || | | || || |
Sbjct 203715 CTGGTCGACATATCTGGCCGTG-TTGTTGAAAACACGAAGCATGGGAATGACACCATTGG 203773
Query 245223 AGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT-- 245280
| ||||||||||| ||||||| ||| || | | | ||| | |||||||
Sbjct 203774 ACGTCCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGC---GCGAATGC-GGTGGACATTC 203829
Query 245281 --GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATG 245338
||| | || || || ||||||||| | ||||||| |||||| ||||| |||
Sbjct 203830 AAGCCGATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATG 203889
Query 245339 CCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGG 245398
||||| ||||||||| |||||||| || || ||||| || |||||||| | ||
Sbjct 203890 CCCTCGATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGACGACAGCTGACATTGAGGT 203949
Query 245399 CTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437
||| | |||||| || ||||| |||||| || |||
Sbjct 203950 GTGCCAGCGTTGAATAGTGTGGGTGAGGCGTGTGTGAAG 203988
>seq96
Length=87723
Score = 134 bits (148), Expect = 3e-26
Identities = 311/458 (68%), Gaps = 13/458 (3%)
Strand=Plus/Minus
Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752
|||| | || | |||| || ||| | ||||| || || || |||||| || || ||
Sbjct 52430 TTCGCCCAGCGCTTGGTTGCTTTTGCTGCCGTGGAAGGTATTTTCTTCAGCGGTGCTTTT 52371
Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAA 42812
|| || ||||||||||| ||| || | | ||||||||| ||||||||||| ||||||
Sbjct 52370 GCTTCTATCTTCTGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAA 52311
Query 42813 CTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCAC 42872
| ||| | || ||||| ||||| | |||||||||||| | ||| ||| |||
Sbjct 52310 TTAATCTCGCGTGATGAGGGTCTGCACACAGACTTTGCCTGCTTGCTGCACTC---TCAC 52254
Query 42873 CTCAGGCA-CAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGAT 42931
| | ||| | |||| | ||| || | ||| || || || || || || ||
Sbjct 52253 TTGAAGCACCGAGCCAGC-AAGCAGATGATCCAACAGATTATTACAGATGCTGTCACCAT 52195
Query 42932 CGAGAAGGAGTTCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAA--CCACGA 42988
|||||| ||||| || || || | |||| ||| | || | |||||||| ||||
Sbjct 52194 CGAGAAAGAGTTTCTGACTGAGGCTTTGCCATGTG-CTCTACTTGGCATGAATGCCAC-- 52138
Query 42989 CCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCT-CCTGTGCCAGATGGGTCTCA 43047
| ||| ||||||| ||| || ||||| | || | ||| | ||| | |
Sbjct 52137 ATTGATGAAACAGTACATTGAGTTTGTAGCCGATCGCCTGCTTGTTGCTCTTGGTAATGA 52078
Query 43048 GCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCA 43107
| | | ||||| ||| | || || ||||| |||||||||||||| |||| ||||
Sbjct 52077 GAAG-GTGTACAAGACGGCTAATCCTTTTGACTTCATGGAGAACATCTCATTGGGTGGCA 52019
Query 43108 AGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145
|||| ||||| |||||||| || || | || ||||||
Sbjct 52018 AGACAAACTTCTTCGAGAAACGAGTGGGTGAGTACCAG 51981
Score = 86.0 bits (94), Expect = 1e-11
Identities = 177/259 (68%), Gaps = 7/259 (3%)
Strand=Plus/Minus
Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359
|||||| |||||||| ||||| || || |||||| ||||| ||||| || |||
Sbjct 52883 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCTTTCTGGACGGCCGAAGAGATCGATCTG 52824
Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACT-GTCTGA--GA--ACGAAAAGTTTTTCCTCA 42414
| || || | || |||| | || | |||||| || | || || | |||| ||
Sbjct 52823 TCGAAAGATTTGCACGACTGGAA--CAATCGTCTGAATGACGATGAGAAATATTTCATCT 52766
Query 42415 AAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCA 42474
|||| ||||| ||||| || |||||||||||||| ||||| |||||| |||
Sbjct 52765 CCCACATTCTGGCATTCTTTGCTGCCTCTGACGGCATTGTCAACGAGAACTTGGTTGAGC 52706
Query 42475 GGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCA 42534
| |||| || || || | |||||| || ||||| ||||| |||||||| |
Sbjct 52705 GCTTCAGCGGCGAAGTCCAAGTCCCTGAGGCTCGTTGCTTTTACGGATTCCAGATCATGA 52646
Query 42535 TAGAGAACGTGCACTCTGA 42553
| ||||| | ||||| ||
Sbjct 52645 TGGAGAATATCCACTCGGA 52627
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944308154848800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |