Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq20 140 8e-28
seq13 127 5e-24
>seq20
Length=366416
Score = 140 bits (154), Expect = 8e-28
Identities = 160/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|| || ||||| | || || ||||||| ||| || || ||||| ||||| ||||||
Sbjct 156377 CCGCCACGGAGGCGGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTATAATCGGCG 156436
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
||||| || |||||||| || ||||| || ||||| ||||||||||| || | ||
Sbjct 156437 AGCGTACGGCCGTCTTCCAACTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGA 156496
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| ||||| || || || || || | ||| || || || |||| ||| ||||| ||
Sbjct 156497 ATGCCTTCCTTGTCTTGAATCTTTGATTTGACATTGTCGATAGTATCAGAAGATTCCACC 156556
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
||||| || || ||||| ||||||| |||||||||
Sbjct 156557 TCGAGGGTAATGGTCTTTCCGGTCAAAGTCTTGAC 156591
Score = 122 bits (134), Expect = 2e-22
Identities = 167/232 (72%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| ||||| | || || ||||| | || ||| || ||||| || ||||
Sbjct 156663 CATG-CCACCACGGAGGCGGAGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGT 156721
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| ||||| ||||| ||||| || | || ||||| || || |||||||||||||| |
Sbjct 156722 CTGCGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGTCAG 156781
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
|| ||||| || || ||||| || || | || || || || || | || || |
Sbjct 156782 GAGGAATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCAGATGACT 156841
Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| || || || ||||| ||||| ||||| || || |||||||| ||||||||
Sbjct 156842 CGACCTCAAGAGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATCTGCAT 156893
Score = 111 bits (122), Expect = 4e-19
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || || || || ||||| || || || ||||| || || | ||||| || ||||||
Sbjct 156185 TCCTTCTGAATGTTGTAGTCTGCAAGTGTCCGTCCATCCTCAAGCTGTTTCCCGGCGAAG 156244
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| |||||||| || || || |||||||| || || || || | ||||||||
Sbjct 156245 ATAAGACGCTGCTGGTCGGGAGGAATGCCTTCTTTGTCTTGAATCTTTGACTTCACGTTG 156304
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
||||| | || ||||| || || || ||||| ||||| || || || |||||||||
Sbjct 156305 TCTATTGTGTCAGAAGATTCCACCTCAAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACG 156364
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 156365 AAGATCTGCAT 156375
>seq13
Length=451911
Score = 127 bits (140), Expect = 5e-24
Identities = 149/200 (75%), Gaps = 6/200 (3%)
Strand=Plus/Plus
Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336
||||| || || ||||| || |||||||| || ||||| || || || | || || ||
Sbjct 17305 GTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 17364
Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| ||||| || ||||| || |||||| || || || || ||||||||||| |
Sbjct 17365 GCAAAGATGAGTCGCTGCTGG---TCTGGGGGGATGCCCTCCTTGTCCTGGATTTTGGAC 17421
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
|| ||||| || || | ||| || || || ||||| |||||||||||||| || ||
Sbjct 17422 TTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTCCCTGTGAGG 17481
Query 288454 GTCTTGACGAATATCTGCAT 288473
||||||||||| ||||||||
Sbjct 17482 GTCTTGACGAAAATCTGCAT 17501
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179614649333140
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |