Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq5 163 3e-35
>seq5
Length=693879
Score = 163 bits (180), Expect = 3e-35
Identities = 585/912 (64%), Gaps = 2/912 (0%)
Strand=Plus/Minus
Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783
||||||| |||||| ||| ||||| ||| || || |||||| | | |||| | || |
Sbjct 204146 TACTTTGGCTTCAAGACTTTGGAGCGGTCATATCTTCTCAAGCTCAACGGCAAGATTGTC 204087
Query 93784 GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCG 93843
|||||||| || || || | ||||| ||||| ||||||| || || | || |
Sbjct 204086 GAGCGACCCCAGCACATGATTATGCGTGTCGCTGTCGGGATCTGGGGAGACAATATTGAG 204027
Query 93844 AATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACCCCGACC 93903
|| || | | | |||| ||| | || ||| | || ||
Sbjct 204026 CGAGTCCTGGAAACCTACCATCTCATGTCCAGCAAACTCTTCACACACGCCTCACCCACA 203967
Query 93904 CTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT-GACGAACAA 93962
|| |||||||| || || || ||| |||| || || ||||| | ||| | ||
Sbjct 203966 CTATTCAACGCTGGCACACCTCAATGTCAGCTGTCGTCTTGCTTCCTCGTCGAC-ATGAA 203908
Query 93963 GGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATA 94022
|| ||| |||| || || | |||| |||||| ||| || | ||||| ||
Sbjct 203907 GGAGGACAGCATCGAGGGCATCTATGACACGCTCAAGACCTGCGCCATGATCTCCAAGAT 203848
Query 94023 CGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGG 94082
|| || || ||||| | | ||||||| | | || |||| || |||||||| |||
Sbjct 203847 GGCTGGTGGTATCGGCTTGAATGTCCACCGCATTCGCGCCACTGGCTCCTACATTGCCGG 203788
Query 94083 TACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCG 94142
||||| || || ||||| || || | || ||||| || || ||||||||| |||| |
Sbjct 203787 CACCAACGGGACGTCCAATGGTGTCATTCCCATGCTTCGTGTTTTCAACAACACGGCCAG 203728
Query 94143 CTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTG 94202
|| || ||||||||||| | | | || |||| || | || | ||||| ||
Sbjct 203727 ATATGTCGACCAGGGTGGCAACAAGCGACCTGGCGCTTTTGCCATTTACTTGGAGCCTTG 203668
Query 94203 GCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAG 94262
|||||| || ||| | ||| | || |||||||||| |||||||| || | |
Sbjct 203667 GCACGCCGATGTGTTTGAGTTCCTTGATTTGCGAAAGAATCACGGCAAGGAAGAAGTCCG 203608
Query 94263 GGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAA 94322
|| | || | ||| ||||| ||| | || || ||||| ||||| |||||||||||
Sbjct 203607 TGCTCGTGATTTATTCCTTGCTCTTTGGATTCCCGATCTTTTCATGAAGCGCGTCGAGAA 203548
Query 94323 AAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGG 94382
||| | |||| ||| | || ||||| ||||| ||||| ||| | ||| | ||
Sbjct 203547 GAACGGTGATTGGACTCTGATGTGCCCCAACGAATGCCCCGGCCTGGCTGACTGCTACGG 203488
Query 94383 ATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGAAGGTTAT 94442
| ||||| | | |||| || || ||||||||| | | ||
Sbjct 203487 CGAGGAGTTTGAGGCTCTCTATGAAAAGTATGAGCGTGAGGGCAAGGGTCGTGCGACCAT 203428
Query 94443 GGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTA 94502
||| |||||| ||| | ||| |||| | ||| |||||||||| || |
Sbjct 203427 TCGTGCCCAGAAGCTCTGGTACTCCATCCTGGAGGCCCAGACAGAGACGGGTAATCCTTT 203368
Query 94503 CATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAA 94562
||| | | |||||| | |||| ||| ||||||| || || | || |||
Sbjct 203367 CATGCTCTACAAGGATGCCTGCAACAGGAAGAGCAACCAGAAGAACTTGGGAACAATCCG 203308
Query 94563 GAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTG 94622
||||| || || ||||| || ||||||||||| || | || || ||| | ||||| ||
Sbjct 203307 CAGCTCCAACCTTTGCACGGAAATTGTCGAGTACTCTGCCCCTGATGAGGTCGCTGTTTG 203248
Query 94623 TAACCTGGGCTC 94634
||| ||| |||
Sbjct 203247 CAACTTGGCCTC 203236
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494706935974800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |