Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq13 134 1e-26 seq20 102 8e-17 >seq13 Length=451911 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||| || | || ||| || || || ||||| ||| || Sbjct 17275 CCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCC 17334 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || ||||| |||| | ||||||||| || || || Sbjct 17335 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGG 17394 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| |||||| ||||| |||| |||| |||||| | | ||| || Sbjct 17395 ATGCCCTCCTTGTCCTGGATTTTGGACTTGACGTTG-TCGATGGTGTCGGAAGACTCCAC 17453 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | ||| || || || || || || || ||||||||||| Sbjct 17454 CTCGAGGGTGATCGTCTTCCCTGTGAGGGTCTTGACGAAAATCTGCAT 17501 >seq20 Length=366416 Score = 102 bits (112), Expect = 8e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || || ||||||||||| || | || ||||| || ||||| ||||| || | Sbjct 156149 CCACCACGCAAACGCAACACCAAGTGCAAGGTTGACTCCTTCTGAATGTTGTAGTCTGCA 156208 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || |||||||| || ||| |||| | |||||||| |||||||| Sbjct 156209 AGTGTCCGTCCATCCTCAAGCTGTTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGA 156268 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||| || |||| | ||| | | || ||| | |||| || | ||||| | | || | Sbjct 156269 ATGCCTTCTTTGT-CTTGAATCTTTGACTTCACGTTG-TCTATTGTGTCAGAAGATTCCA 156326 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | ||| | || || || || || || || || || |||||||| Sbjct 156327 CCTCAAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 156375 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||| | ||| | || || || || || || ||||| || | Sbjct 156667 CCACCACGGAGGCGGAGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCTGCG 156726 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| |||||||| | |||| ||||| || || ||||| Sbjct 156727 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGTCAGGAGGA 156786 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| || || ||||| | |||| |||||| | |||||| Sbjct 156787 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCAGATGACTCGACC 156846 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || | || | || |||||||| || ||||| || |||||||||||| || Sbjct 156847 TCAAGAGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATCTGCATGACT 156897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475485167911200