Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq5 237 2e-57 >seq5 Length=693879 Score = 237 bits (262), Expect = 2e-57 Identities = 1123/1756 (64%), Gaps = 75/1756 (4%) Strand=Plus/Plus Query 115563 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 115622 ||||||||| ||||||||||| ||| | |||||| | | ||||| || | | ||| Sbjct 202362 GTAGTACATGCCCGTCTTGAGGCCCAGTTTCCAGCCGGTAAAGTGCATGGAAGTGATCTT 202421 Query 115623 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 115682 | | || ||| | |||| | ||| | | ||||| || |||||||| || Sbjct 202422 GCCCATAGTGGGATCCTTCATGTGAATGTTAAGAGACTGGGACTGGTCGATGAAAGCACC 202481 Query 115683 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGA--TTTCCCACACAGTTCTGTAG 115740 || || || ||||| | | || | || | || ||||||| |||||| ||||| Sbjct 202482 ACGGTCAGCAGCCATCTGCACGACGTG--TCGTTGAGAAATTTCCCAAACAGTTTTGTAG 202539 Query 115741 AGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACC 115800 || || || || | ||||| | |||||| || || || ||| || | | Sbjct 202540 AGAGCTTTGATGTCGGCCGGGATGTTGGGGATATTCTGAATGGA---ACCGTTCTCGGCA 202596 Query 115801 ATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCA----C 115853 |||| | | ||||||| | | ||||| || || || | |||||| | || | Sbjct 202597 ATGATACGGTTCTTCATAGCATCAGACCAAAGGCCCATGTCGACGAGATCTTTCAGCAGC 202656 Query 115854 GAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGT 115913 ||| | |||||||| || ||||| || ||| || | | || ||||||| Sbjct 202657 CAGGGG----TTGACAACCTGGAATTCACCTGCCAGGACACGGCGTTGGTAAATGTTGGA 202712 Query 115914 CGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCAT 115973 |||||| ||||| ||||||||||||||||| | || || | || || || || ||||| Sbjct 202713 CGTGTAAGGCTCGAAGCACTCATTGTTACCTAGAATCTGAGAGGTAGAAGCCGTAGGCAT 202772 Query 115974 GGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTC 116033 ||| || | || || |||||| | || | || | || | ||||| || | Sbjct 202773 GGGGGCGAGCAGCAGTGAGTTGCGAATTCCATGCTCCTTGATCTGCTCCTTCAGACTATT 202832 Query 116034 CCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGA 116093 ||| || || | | || | | |||||||| |||||||| || || || | ||| Sbjct 202833 CCACTCCCAGAGGTCAGAAGGCTTCACGTCCCACATGTCAAACTGAAGAATGCCCTCGGA 202892 Query 116094 CGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG---GAGCT 116150 || || || |||||||| || || || || | ||| ||||||||| ||| Sbjct 202893 GGCGGGAGAGCCCTCAAAGGTAGAGTAAGGTCCTTGCTCCTTGGCCAATTCGACAGAG-- 202950 Query 116151 CGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTC 116210 || |||||| || || || || |||||||| || | || | | |||||| Sbjct 202951 -GCAGTGAGGGCAGCATGGTAGATGGTCTCAAATATCTGCTTGTTGAGCTCACGGGCCTC 203009 Query 116211 GTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAG 116270 ||| ||||| | | || | || || | || |||||||| ||||| || | Sbjct 203010 AGGGGACTCAAATGGCATGCGCAAGGCAAGGAAAGCGTCGGCGAGACCCTGGACGCCAAC 203069 Query 116271 GCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCT 116330 ||||| || || |||| ||| || || || || || ||||| || || Sbjct 203070 ACCAATCGGCCGGTGTCGCATGTTGCTGTTCCGGGCCTCCTGGACGGGGTAGTGGTTGAC 203129 Query 116331 ATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTA 116390 ||| || | || || || || || |||| |||| || || ||||| | | | Sbjct 203130 ATCAATGATTCTGTTCAGGTTGCGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAA 203189 Query 116391 ATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGG----GCGATTGACGCCAGAT 116446 || | ||| ||| | | | | ||| ||| ||| || | || |||| | Sbjct 203190 GTCGTA---GCGTCCCTCGTTGTAGTC-TACGAAGGCAGGCAGAGCCAGAGAGGCCAAGT 203245 Query 116447 TACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAAC 116506 | || |||| | |||||| ||| |||||| | ||||||||| || | || || | Sbjct 203246 TGCAAACAGCGACCTCATCAGGGGCAGAGTACTCGACAATTTCCGTGCAAAGGTTGGAGC 203305 Query 116507 TCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCA 116566 | || || ||||||||||| || || ||| |||| || |||||||||||||||| Sbjct 203306 TGCGGATTGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTAGAGCA 203365 Query 116567 TATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCT 116625 | | || | |||||||| || |||| || || || | | ||| | | || | Sbjct 203366 TGAAAGGATTACCCGTCTCTGTCTGGGCCTCCAGGATGGAGTACCAGAGCTTCTG----- 203420 Query 116626 GGCAC-AGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTACTTTGTGTAGAGGGCCTC 116678 ||||| | ||| | || || |||| |||| ||| |||||| ||||| ||||| Sbjct 203421 GGCACGAATGG---TCGCACGACCCTTGCCCTCACGCTCATACTTTTCATAGAGAGCCTC 203477 Query 116679 AAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTT-ATCTGGACAGAAGAGAGAC 116736 |||||| || || ||| || | || || || || || | || || | |||| | Sbjct 203478 AAACTCCTC-GCCGTAGCAGTCAGCCAGGCC-GGGGCATTCGTTGGGGCACATCAGAGTC 203535 Query 116737 CATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAG 116796 || | ||| || ||| || ||||||||||| || || || ||||| || || ||| Sbjct 203536 CAATCACCGTTCTTCTCGACGCGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAAT 203595 Query 116797 AGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATG 116856 | ||| ||| || ||||||| | || ||||| ||||| || | || || | Sbjct 203596 AAATCACGAGCACGGACTTCTTCCTTGCCGTGATTCTTTCGCAAATCAAGGAACTCAAAC 203655 Query 116857 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC--CTTGC--GACGACCAGC 116912 | ||| |||||||| || |||| ||| | || | | || | || | | ||| | Sbjct 203656 ACATCGGCGTGCCAAGGCTCCAAGTAAATGGCAAAAGCGCCAGGTCGCTTGTTG-CCACC 203714 Query 116913 CTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGA 116972 ||||| ||||| || ||||| ||| || || |||||||| ||||||| ||||| || Sbjct 203715 CTGGTCGACATATCTGGCCGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTGGA 203774 Query 116973 TTGGCCATTTGTCCCCCGAA--TACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATA 117030 || || || || || || ||| | |||| | | ||||| | || Sbjct 203775 CGTCCCGTTGGTGCCGGCAATGTAGGAGCC--AGTGGCGCGAATGCGGTGGACATTCAAG 203832 Query 117031 CCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCA 117090 || ||||| || ||| ||| ||||| ||||| | |||| || | ||||| || Sbjct 203833 CCGATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCC 203892 Query 117091 TCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTT--GGTG 117148 ||||| ||| |||| | ||| ||||||||| ||||| || | || |||| Sbjct 203893 TCGATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGACGACA--GCTGACATTGAGGTG 203950 Query 117149 TACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACA--TACCTTGGGACATCTTATC 117206 | ||||||||||| || || |||| ||||| |||| | | || |||||| || Sbjct 203951 TGCCAGCGTTGAATAGTGTGGGTGAGGCGTGTGTGAAGAGTTTGCT--GGACATGAGATG 204008 Query 117207 GTAGGTCTCCAAGACAGAGGGAA---TGTCTTCCCCGTGAATACCGATTGAGACCCGCAT 117263 |||||| |||| ||| || ||||| ||| | || |||| | ||| ||||| Sbjct 204009 GTAGGTTTCCAGGACTCGCTCAATATTGTCTCCCCAG---ATCCCGACAGCGACACGCAT 204065 Query 117264 AAACATGTATTGGGGT 117279 || ||||| |||||| Sbjct 204066 AATCATGTGCTGGGGT 204081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613487030950800