Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq5 237 2e-57
>seq5
Length=693879
Score = 237 bits (262), Expect = 2e-57
Identities = 1123/1756 (64%), Gaps = 75/1756 (4%)
Strand=Plus/Plus
Query 115563 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 115622
||||||||| ||||||||||| ||| | |||||| | | ||||| || | | |||
Sbjct 202362 GTAGTACATGCCCGTCTTGAGGCCCAGTTTCCAGCCGGTAAAGTGCATGGAAGTGATCTT 202421
Query 115623 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 115682
| | || ||| | |||| | ||| | | ||||| || |||||||| ||
Sbjct 202422 GCCCATAGTGGGATCCTTCATGTGAATGTTAAGAGACTGGGACTGGTCGATGAAAGCACC 202481
Query 115683 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGA--TTTCCCACACAGTTCTGTAG 115740
|| || || ||||| | | || | || | || ||||||| |||||| |||||
Sbjct 202482 ACGGTCAGCAGCCATCTGCACGACGTG--TCGTTGAGAAATTTCCCAAACAGTTTTGTAG 202539
Query 115741 AGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACC 115800
|| || || || | ||||| | |||||| || || || ||| || | |
Sbjct 202540 AGAGCTTTGATGTCGGCCGGGATGTTGGGGATATTCTGAATGGA---ACCGTTCTCGGCA 202596
Query 115801 ATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCA----C 115853
|||| | | ||||||| | | ||||| || || || | |||||| | || |
Sbjct 202597 ATGATACGGTTCTTCATAGCATCAGACCAAAGGCCCATGTCGACGAGATCTTTCAGCAGC 202656
Query 115854 GAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGT 115913
||| | |||||||| || ||||| || ||| || | | || |||||||
Sbjct 202657 CAGGGG----TTGACAACCTGGAATTCACCTGCCAGGACACGGCGTTGGTAAATGTTGGA 202712
Query 115914 CGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCAT 115973
|||||| ||||| ||||||||||||||||| | || || | || || || || |||||
Sbjct 202713 CGTGTAAGGCTCGAAGCACTCATTGTTACCTAGAATCTGAGAGGTAGAAGCCGTAGGCAT 202772
Query 115974 GGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTC 116033
||| || | || || |||||| | || | || | || | ||||| || |
Sbjct 202773 GGGGGCGAGCAGCAGTGAGTTGCGAATTCCATGCTCCTTGATCTGCTCCTTCAGACTATT 202832
Query 116034 CCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGA 116093
||| || || | | || | | |||||||| |||||||| || || || | |||
Sbjct 202833 CCACTCCCAGAGGTCAGAAGGCTTCACGTCCCACATGTCAAACTGAAGAATGCCCTCGGA 202892
Query 116094 CGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG---GAGCT 116150
|| || || |||||||| || || || || | ||| ||||||||| |||
Sbjct 202893 GGCGGGAGAGCCCTCAAAGGTAGAGTAAGGTCCTTGCTCCTTGGCCAATTCGACAGAG-- 202950
Query 116151 CGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTC 116210
|| |||||| || || || || |||||||| || | || | | ||||||
Sbjct 202951 -GCAGTGAGGGCAGCATGGTAGATGGTCTCAAATATCTGCTTGTTGAGCTCACGGGCCTC 203009
Query 116211 GTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAG 116270
||| ||||| | | || | || || | || |||||||| ||||| || |
Sbjct 203010 AGGGGACTCAAATGGCATGCGCAAGGCAAGGAAAGCGTCGGCGAGACCCTGGACGCCAAC 203069
Query 116271 GCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCT 116330
||||| || || |||| ||| || || || || || ||||| || ||
Sbjct 203070 ACCAATCGGCCGGTGTCGCATGTTGCTGTTCCGGGCCTCCTGGACGGGGTAGTGGTTGAC 203129
Query 116331 ATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTA 116390
||| || | || || || || || |||| |||| || || ||||| | | |
Sbjct 203130 ATCAATGATTCTGTTCAGGTTGCGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAA 203189
Query 116391 ATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGG----GCGATTGACGCCAGAT 116446
|| | ||| ||| | | | | ||| ||| ||| || | || |||| |
Sbjct 203190 GTCGTA---GCGTCCCTCGTTGTAGTC-TACGAAGGCAGGCAGAGCCAGAGAGGCCAAGT 203245
Query 116447 TACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAAC 116506
| || |||| | |||||| ||| |||||| | ||||||||| || | || || |
Sbjct 203246 TGCAAACAGCGACCTCATCAGGGGCAGAGTACTCGACAATTTCCGTGCAAAGGTTGGAGC 203305
Query 116507 TCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCA 116566
| || || ||||||||||| || || ||| |||| || ||||||||||||||||
Sbjct 203306 TGCGGATTGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTAGAGCA 203365
Query 116567 TATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCT 116625
| | || | |||||||| || |||| || || || | | ||| | | || |
Sbjct 203366 TGAAAGGATTACCCGTCTCTGTCTGGGCCTCCAGGATGGAGTACCAGAGCTTCTG----- 203420
Query 116626 GGCAC-AGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTACTTTGTGTAGAGGGCCTC 116678
||||| | ||| | || || |||| |||| ||| |||||| ||||| |||||
Sbjct 203421 GGCACGAATGG---TCGCACGACCCTTGCCCTCACGCTCATACTTTTCATAGAGAGCCTC 203477
Query 116679 AAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTT-ATCTGGACAGAAGAGAGAC 116736
|||||| || || ||| || | || || || || || | || || | |||| |
Sbjct 203478 AAACTCCTC-GCCGTAGCAGTCAGCCAGGCC-GGGGCATTCGTTGGGGCACATCAGAGTC 203535
Query 116737 CATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAG 116796
|| | ||| || ||| || ||||||||||| || || || ||||| || || |||
Sbjct 203536 CAATCACCGTTCTTCTCGACGCGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAAT 203595
Query 116797 AGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATG 116856
| ||| ||| || ||||||| | || ||||| ||||| || | || || |
Sbjct 203596 AAATCACGAGCACGGACTTCTTCCTTGCCGTGATTCTTTCGCAAATCAAGGAACTCAAAC 203655
Query 116857 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC--CTTGC--GACGACCAGC 116912
| ||| |||||||| || |||| ||| | || | | || | || | | ||| |
Sbjct 203656 ACATCGGCGTGCCAAGGCTCCAAGTAAATGGCAAAAGCGCCAGGTCGCTTGTTG-CCACC 203714
Query 116913 CTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGA 116972
||||| ||||| || ||||| ||| || || |||||||| ||||||| ||||| ||
Sbjct 203715 CTGGTCGACATATCTGGCCGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTGGA 203774
Query 116973 TTGGCCATTTGTCCCCCGAA--TACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATA 117030
|| || || || || || ||| | |||| | | ||||| | ||
Sbjct 203775 CGTCCCGTTGGTGCCGGCAATGTAGGAGCC--AGTGGCGCGAATGCGGTGGACATTCAAG 203832
Query 117031 CCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCA 117090
|| ||||| || ||| ||| ||||| ||||| | |||| || | ||||| ||
Sbjct 203833 CCGATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCC 203892
Query 117091 TCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTT--GGTG 117148
||||| ||| |||| | ||| ||||||||| ||||| || | || ||||
Sbjct 203893 TCGATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGACGACA--GCTGACATTGAGGTG 203950
Query 117149 TACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACA--TACCTTGGGACATCTTATC 117206
| ||||||||||| || || |||| ||||| |||| | | || |||||| ||
Sbjct 203951 TGCCAGCGTTGAATAGTGTGGGTGAGGCGTGTGTGAAGAGTTTGCT--GGACATGAGATG 204008
Query 117207 GTAGGTCTCCAAGACAGAGGGAA---TGTCTTCCCCGTGAATACCGATTGAGACCCGCAT 117263
|||||| |||| ||| || ||||| ||| | || |||| | ||| |||||
Sbjct 204009 GTAGGTTTCCAGGACTCGCTCAATATTGTCTCCCCAG---ATCCCGACAGCGACACGCAT 204065
Query 117264 AAACATGTATTGGGGT 117279
|| ||||| ||||||
Sbjct 204066 AATCATGTGCTGGGGT 204081
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613487030950800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |