Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq5 125 1e-23 seq96 109 9e-19 seq82 86.0 1e-11 >seq5 Length=693879 Score = 125 bits (138), Expect = 1e-23 Identities = 381/576 (66%), Gaps = 12/576 (2%) Strand=Plus/Plus Query 203842 GTCCACCGTGAACTGAATGGCGTTCACGGCAG--GCCTGCTT-CTCAGATAGTACATGCC 203898 |||||| |||||||| || | || | ||||| || ||| | | || ||||||||||| Sbjct 202317 GTCCACGGTGAACTGGATAG-GTGC--GGCAGCAGCTTGCGTGCGCAAGTAGTACATGCC 202373 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958 ||||| |||||| | ||| ||| | ||||||||||| | |||| || |||| Sbjct 202374 CGTCTTGAGGCCCAGTTTCCAGCCGGTAAAGTGCATGGAAGTGATCTTGCCCATAGTGGG 202433 Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGC 204018 || |||||||||||| ||||||||| ||||||||||||| | || || || || Sbjct 202434 ATCCTTCATGTGAATGTTAAGAGACTGGGACTGGTCGATGAAAGCACCACGGTCAGCAGC 202493 Query 204019 CATATTGATAATG-GTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGT 204077 ||| | | | | ||| | || ||||| ||||| || || ||| | | || || ||| Sbjct 202494 CATCTGCACGACGTGTCGT-TGAGAAATTTCCCAAACAGTTTTGTAGAGAGCTTTGATGT 202552 Query 204078 GTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCTC 204136 || | | | | | ||| || || ||||| ||||| || | | || || Sbjct 202553 CGGCCGGGATGT-TGGGGATATTCTGAATGGAACCGTTCTCGGCAATGATACGGTTCTTC 202611 Query 204137 GTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATC 204196 | | || ||| | ||||| || || || || ||| |||||||| | | Sbjct 202612 ATAGCATCAGACCAAAGGCCCATGTCGACGAGATCTTTCAGCAGCCAGGGGTTGACAACC 202671 Query 204197 TGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCC 204256 || || || || | ||| || | || | | | |||| ||| | || ||||| | Sbjct 202672 TGGAATTCACCTGCCAGGACACGGCGTTGGTAAATGTTGGACGTGTAAGGCTCGAAGCAC 202731 Query 204257 TCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAG 204316 || ||||| || | |||||||| ||| ||||| |||||||| || || ||||| ||| Sbjct 202732 TCATTGTTACCTAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGGGCGAGCAGCAGTGAG 202791 Query 204317 TTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCATCGCACT 204375 ||||| | || | | | || |||| ||||||| |||| || | || Sbjct 202792 TTGCGAATTCCATGCTCCTTGA-TCTGCTCCTTCAGACTATTCCACTCCCAGAGGTCAGA 202850 Query 204376 GGGTTTCACGCCCCACATGTCGAACTGAAAGATGCC 204411 || |||||| |||||||||| ||||||| ||||| Sbjct 202851 AGGCTTCACGTCCCACATGTCAAACTGAAGAATGCC 202886 Score = 96.9 bits (106), Expect = 6e-15 Identities = 355/543 (65%), Gaps = 16/543 (3%) Strand=Plus/Plus Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACA 205119 ||| || ||| || || ||| |||| || ||||| ||| ||| || || || Sbjct 203454 CTCATACTTTTCATAGAGAGCCTCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCA 203513 Query 205120 TTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTC---ACCCTCTCCATAAACAG 205176 || ||||| |||||||||| ||| ||| | ||| ||| || | || ||| || || Sbjct 203514 TTCGTTGGGGCACATCAGAGTCCA-ATC--ACCGTTCTTCTCGACGCGCTTCATGAAAAG 203570 Query 205177 GTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTT 205236 ||| ||||| || | || | |||||| || | | | | || | || | || Sbjct 203571 ATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGCACGGACTTCTTCCTTGCCGTGATT 203630 Query 205237 CTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCAT 205296 |||| ||| || || | | | ||||||||||| ||||| || | | ||| | Sbjct 203631 CTTTCGCAAATCAAGGAACTCAAACACATCGGCGTGCCAAGGCTCCAAGTAAATGGCAAA 203690 Query 205297 TGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCG 205356 ||||| || | |||||| ||||||||||| || | | | | ||||||||| || Sbjct 203691 AGCGCCAGGTCGCTTGTTGCCACCCTGGTCGACATATCTGGCCGTGTTGTTGAAAACACG 203750 Query 205357 CAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGC 205416 ||||| || | | ||| |||| |||||||| |||| | ||| ||||| || Sbjct 203751 AAGCATGGGAATGACACCATTGGACGTCCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGC 203810 Query 205417 CCTCA--CGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCA- 205473 | | || |||| || | ||| || || |||| ||||| |||| |||||| Sbjct 203811 GCGAATGCGGTGGACAT--TCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCGCAG 203868 Query 205474 CTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC-ACCAGATAGC 205532 ||||| || ||| |||||||| ||||| || ||| || |||| || || ||| Sbjct 203869 GTCTTG-AGCGTGTCATAGATGCCCTCGATGCTGTCCTCCTTCA-TGTCGACGAGGAAGC 203926 Query 205533 ACGAAGCCAGCTTGGCAAAGTTG-GTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTG 205591 | || | |||| || || | | ||||| |||| ||| || ||||| |||||| || Sbjct 203927 AAGACGACAGC-TGACATTGAGGTGTGCCAGCGTTGAATAGTGTGGGTGAGGCGTGTGTG 203985 Query 205592 AAG 205594 ||| Sbjct 203986 AAG 203988 >seq96 Length=87723 Score = 109 bits (120), Expect = 9e-19 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 159916 CAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACAT 159975 ||| | ||| |||||||| |||||| ||||| || || ||||| || |||||||| | Sbjct 52263 CAGCAAGCAGGCAAAGTCTGTGTGCAGACCCTCATCACGCGAGATTAATTCGTTGGAGAA 52322 Query 159976 GATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCT 160035 | |||| || ||||| | |||||| || ||||| || || | |||||||||||||| Sbjct 52323 GGTGAGACCGGGCATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCT 52382 Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCAC 160068 || || || || |||||||| ||||| || || Sbjct 52383 GAAGAAAATACCTTCCACGGCAGCAAAAGCAAC 52415 >seq82 Length=110760 Score = 86.0 bits (94), Expect = 1e-11 Identities = 75/91 (82%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 116097 TGTCTGTTTTACCAAAGATC-TGCAGACATGGGGTTGGGCGTACCCTTTAACGTTGCGAG 116155 |||| || |||||| |||| ||| |||||||| |||||||| ||||| ||| ||||||| Sbjct 76433 TGTCAATTATACCAACGATCCTGC-GACATGGGATTGGGCGTGCCCTTCAACATTGCGAG 76491 Query 116156 CTACGCGCTACTGACTCATATTATGGCACAT 116186 ||||||||| || || || || || |||||| Sbjct 76492 CTACGCGCTCCTCACCCACATGATCGCACAT 76522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795129059272800