Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq5 125 1e-23
seq96 109 9e-19
seq82 86.0 1e-11
>seq5
Length=693879
Score = 125 bits (138), Expect = 1e-23
Identities = 381/576 (66%), Gaps = 12/576 (2%)
Strand=Plus/Plus
Query 203842 GTCCACCGTGAACTGAATGGCGTTCACGGCAG--GCCTGCTT-CTCAGATAGTACATGCC 203898
|||||| |||||||| || | || | ||||| || ||| | | || |||||||||||
Sbjct 202317 GTCCACGGTGAACTGGATAG-GTGC--GGCAGCAGCTTGCGTGCGCAAGTAGTACATGCC 202373
Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958
||||| |||||| | ||| ||| | ||||||||||| | |||| || ||||
Sbjct 202374 CGTCTTGAGGCCCAGTTTCCAGCCGGTAAAGTGCATGGAAGTGATCTTGCCCATAGTGGG 202433
Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGC 204018
|| |||||||||||| ||||||||| ||||||||||||| | || || || ||
Sbjct 202434 ATCCTTCATGTGAATGTTAAGAGACTGGGACTGGTCGATGAAAGCACCACGGTCAGCAGC 202493
Query 204019 CATATTGATAATG-GTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGT 204077
||| | | | | ||| | || ||||| ||||| || || ||| | | || || |||
Sbjct 202494 CATCTGCACGACGTGTCGT-TGAGAAATTTCCCAAACAGTTTTGTAGAGAGCTTTGATGT 202552
Query 204078 GTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCTC 204136
|| | | | | | ||| || || ||||| ||||| || | | || ||
Sbjct 202553 CGGCCGGGATGT-TGGGGATATTCTGAATGGAACCGTTCTCGGCAATGATACGGTTCTTC 202611
Query 204137 GTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATC 204196
| | || ||| | ||||| || || || || ||| |||||||| | |
Sbjct 202612 ATAGCATCAGACCAAAGGCCCATGTCGACGAGATCTTTCAGCAGCCAGGGGTTGACAACC 202671
Query 204197 TGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCC 204256
|| || || || | ||| || | || | | | |||| ||| | || ||||| |
Sbjct 202672 TGGAATTCACCTGCCAGGACACGGCGTTGGTAAATGTTGGACGTGTAAGGCTCGAAGCAC 202731
Query 204257 TCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAG 204316
|| ||||| || | |||||||| ||| ||||| |||||||| || || ||||| |||
Sbjct 202732 TCATTGTTACCTAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGGGCGAGCAGCAGTGAG 202791
Query 204317 TTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCATCGCACT 204375
||||| | || | | | || |||| ||||||| |||| || | ||
Sbjct 202792 TTGCGAATTCCATGCTCCTTGA-TCTGCTCCTTCAGACTATTCCACTCCCAGAGGTCAGA 202850
Query 204376 GGGTTTCACGCCCCACATGTCGAACTGAAAGATGCC 204411
|| |||||| |||||||||| ||||||| |||||
Sbjct 202851 AGGCTTCACGTCCCACATGTCAAACTGAAGAATGCC 202886
Score = 96.9 bits (106), Expect = 6e-15
Identities = 355/543 (65%), Gaps = 16/543 (3%)
Strand=Plus/Plus
Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACA 205119
||| || ||| || || ||| |||| || ||||| ||| ||| || || ||
Sbjct 203454 CTCATACTTTTCATAGAGAGCCTCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCA 203513
Query 205120 TTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTC---ACCCTCTCCATAAACAG 205176
|| ||||| |||||||||| ||| ||| | ||| ||| || | || ||| || ||
Sbjct 203514 TTCGTTGGGGCACATCAGAGTCCA-ATC--ACCGTTCTTCTCGACGCGCTTCATGAAAAG 203570
Query 205177 GTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTT 205236
||| ||||| || | || | |||||| || | | | | || | || | ||
Sbjct 203571 ATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGCACGGACTTCTTCCTTGCCGTGATT 203630
Query 205237 CTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCAT 205296
|||| ||| || || | | | ||||||||||| ||||| || | | ||| |
Sbjct 203631 CTTTCGCAAATCAAGGAACTCAAACACATCGGCGTGCCAAGGCTCCAAGTAAATGGCAAA 203690
Query 205297 TGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCG 205356
||||| || | |||||| ||||||||||| || | | | | ||||||||| ||
Sbjct 203691 AGCGCCAGGTCGCTTGTTGCCACCCTGGTCGACATATCTGGCCGTGTTGTTGAAAACACG 203750
Query 205357 CAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGC 205416
||||| || | | ||| |||| |||||||| |||| | ||| ||||| ||
Sbjct 203751 AAGCATGGGAATGACACCATTGGACGTCCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGC 203810
Query 205417 CCTCA--CGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCA- 205473
| | || |||| || | ||| || || |||| ||||| |||| ||||||
Sbjct 203811 GCGAATGCGGTGGACAT--TCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCGCAG 203868
Query 205474 CTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC-ACCAGATAGC 205532
||||| || ||| |||||||| ||||| || ||| || |||| || || |||
Sbjct 203869 GTCTTG-AGCGTGTCATAGATGCCCTCGATGCTGTCCTCCTTCA-TGTCGACGAGGAAGC 203926
Query 205533 ACGAAGCCAGCTTGGCAAAGTTG-GTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTG 205591
| || | |||| || || | | ||||| |||| ||| || ||||| |||||| ||
Sbjct 203927 AAGACGACAGC-TGACATTGAGGTGTGCCAGCGTTGAATAGTGTGGGTGAGGCGTGTGTG 203985
Query 205592 AAG 205594
|||
Sbjct 203986 AAG 203988
>seq96
Length=87723
Score = 109 bits (120), Expect = 9e-19
Identities = 116/153 (76%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 159916 CAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACAT 159975
||| | ||| |||||||| |||||| ||||| || || ||||| || |||||||| |
Sbjct 52263 CAGCAAGCAGGCAAAGTCTGTGTGCAGACCCTCATCACGCGAGATTAATTCGTTGGAGAA 52322
Query 159976 GATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCT 160035
| |||| || ||||| | |||||| || ||||| || || | ||||||||||||||
Sbjct 52323 GGTGAGACCGGGCATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCT 52382
Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCAC 160068
|| || || || |||||||| ||||| || ||
Sbjct 52383 GAAGAAAATACCTTCCACGGCAGCAAAAGCAAC 52415
>seq82
Length=110760
Score = 86.0 bits (94), Expect = 1e-11
Identities = 75/91 (82%), Gaps = 2/91 (2%)
Strand=Plus/Plus
Query 116097 TGTCTGTTTTACCAAAGATC-TGCAGACATGGGGTTGGGCGTACCCTTTAACGTTGCGAG 116155
|||| || |||||| |||| ||| |||||||| |||||||| ||||| ||| |||||||
Sbjct 76433 TGTCAATTATACCAACGATCCTGC-GACATGGGATTGGGCGTGCCCTTCAACATTGCGAG 76491
Query 116156 CTACGCGCTACTGACTCATATTATGGCACAT 116186
||||||||| || || || || || ||||||
Sbjct 76492 CTACGCGCTCCTCACCCACATGATCGCACAT 76522
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795129059272800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |