Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq20 134 3e-26 seq13 109 1e-18 >seq20 Length=366416 Score = 134 bits (148), Expect = 3e-26 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || |||||||| || | ||||||||| || | |||| |||||| || ||||| || ||| Sbjct 156179 GTTGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTCCGTCCATCCTCAAGCTGTTTCCCG 156238 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 |||||||| |||||||||||||| ||| ||| |||||| || ||||||||| |||| Sbjct 156239 GCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCTTCTTTGTCTTGAATCTTTGACTTC 156298 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 ||| || | ||||| | | ||| || || | ||||| ||||| || ||||| || Sbjct 156299 ACGTTGTCTATTGTGTCAGAAGATTCCACCTCAAGGGTGATGGTCTTTCCTGTGAGGGTC 156358 Query 199613 TTCACAAAAATTTG 199626 || || || || || Sbjct 156359 TTGACGAAGATCTG 156372 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| |||||||| || ||||| |||| ||||||||| || | || | || || Sbjct 156682 AGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGGCCGTCC 156741 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||| || || || |||||||| ||||| ||| |||||| || ||| Sbjct 156742 TCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCC 156801 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || |||| |||||| | || || || || | ||||| ||| Sbjct 156802 TGAATCTTGGACTTGACATTGTCGATGGTGTCAGATGACTCGACCTCAAGAGTGATGGTC 156861 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || ||||| || ||||| || Sbjct 156862 TTGCCGGTAAGGGTTTTGACGAAAATCTG 156890 Score = 95.1 bits (104), Expect = 3e-14 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| || || || |||||||| |||| ||| || || || | || | || ||| Sbjct 156392 AGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTATAATCGGCGAGCGTACGGCCGTCT 156451 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||| || || ||||| || |||||||||||||| ||| ||| ||||| || Sbjct 156452 TCCAACTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 156511 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||||||| || || |||| || || | | ||| || || | || || ||| Sbjct 156512 TGAATCTTTGATTTGACATTGTCGATAGTATCAGAAGATTCCACCTCGAGGGTAATGGTC 156571 Query 199598 TTACCCGTGAGAGTTTTCACAA 199619 || || || | ||| || |||| Sbjct 156572 TTTCCGGTCAAAGTCTTGACAA 156593 >seq13 Length=451911 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||| || || |||||| |||| ||||||||| |||| || Sbjct 17281 CGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTG 17340 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| || || |||||||| ||||||||||| || || || Sbjct 17341 CGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGGATGCCC 17400 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| || || ||| ||| |||| |||||| | | || || || | Sbjct 17401 TCCTTGTCCTGGATTTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGG 17460 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || ||||| || || || ||||| || Sbjct 17461 GTGATCGTCTTCCCTGTGAGGGTCTTGACGAAAATCTG 17498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178881874026210