Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq96 140 3e-28
seq13 140 3e-28
seq20 127 2e-24
>seq96
Length=87723
Score = 140 bits (154), Expect = 3e-28
Identities = 197/276 (71%), Gaps = 3/276 (1%)
Strand=Plus/Plus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
|||||||||||| | | || || |||||||||| | |||||||| ||| || ||
Sbjct 52599 GTAGGTGTCGATTAAGAGAGAGTATGTTTCCGAGTGGATATTCTCCATCATGATCTGGAA 52658
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
||||||||||| || ||||| || || ||||| ||| ||||| |||| ||
Sbjct 52659 TCCGTAAAAGCAACGAGCCTCAGGGACTTGGACTTCGCCGCTGAAGCGCTCAACCAAGTT 52718
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
|||||||| |||||||| ||| || || || ||||| | ||| ||||||||
Sbjct 52719 CTCGTTGACAATGCCGTCAGAGGCAGCAAAGAATGCCAGAATGTGGGAGATGAAATATTT 52778
Query 133347 CTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
||| | ||| |||| || | ||||||| || || || ||||| || | ||| ||
Sbjct 52779 CTCATCGTCATTCAGACGATTGTTCCAGTCGTGCAAATCTTTCGACAGATCGATCTCTTC 52838
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| | ||||| || || |||||||| |||||||||||
Sbjct 52839 GGCCGTCCAGAAAGAAGCCTCGGCCTTTTTGTACAT 52874
>seq13
Length=451911
Score = 140 bits (154), Expect = 3e-28
Identities = 166/220 (75%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || || ||||| || || || |||||| |||| || ||| |
Sbjct 17504 AAGATGCAGATTTTCGTCAAGACCCTCACAGGGAAGACGATCACCCTCGAGGTGGAGTCT 17445
Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
|||||| | | | |||| | || ||||||| ||||| ||||| || ||| | ||
Sbjct 17444 TCCGACACCATCGACAACG-TCAAGTCCAAAATCCAGGACAAGGAGGGCATCCCCCCAGA 17386
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
||| ||||| ||||| | || ||||| ||||| || || | |||||||| ||||||
Sbjct 17385 CCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCCGACTA 17326
Query 38420 CAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458
||||||||| ||||| ||| || ||||| |||||||||||
Sbjct 17325 CAACATCCAGAAGGAGAGC-ACCCTGCACTTGGTGCTGCG 17287
>seq20
Length=366416
Score = 127 bits (140), Expect = 2e-24
Identities = 157/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| ||||| || || ||||| |||||||| | || |||||| | |
Sbjct 156893 ATGCAGATTTTCGTCAAAACCCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCATCT 156834
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || || || | ||||| ||||||||||| | ||||||
Sbjct 156833 GACACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCTGACCAA 156774
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || |||| || || || ||||| || |||| ||||||||| |||||||||
Sbjct 156773 CAGCGTCTGATTTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCGCAGACTACAAC 156714
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| |||||| | || || ||| | ||||| ||
Sbjct 156713 ATCCAGAAGGAATCAACTCTCCATCTTGTGCTCCG 156679
Score = 111 bits (122), Expect = 2e-19
Identities = 164/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| || || ||||||||| | || || || | |
Sbjct 156375 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTTGAGGTGGAATCTTCT 156316
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | |||| | || ||| || | |||||||| || ||||| |||||||
Sbjct 156315 GACACAATAGACAACG-TGAAGTCAAAGATTCAAGACAAAGAAGGCATTCCTCCCGACCA 156257
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | ||| || |||||||| || || | || || || ||||||||
Sbjct 156256 GCAGCGTCTTATCTTCGCCGGGAAACAGCTTGAGGATGGACGGACACTTGCAGACTACAA 156197
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472
||| || ||||| | || |||| |||||| |||||||| | || ||||
Sbjct 156196 CATTCAGAAGGAGTCAACCTTGCACTTGGTGTTGCGTTTGCGTGGTGGCC 156147
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500156356819200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |