Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq20 111 6e-19 seq11 100 1e-15 >seq20 Length=366416 Score = 111 bits (122), Expect = 6e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 391072 TGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAAC 391131 |||| || || || ||||| || || || ||||| ||||||| || || | | ||| Sbjct 156581 TGACCGGAAAGACCATTACCCTCGAGGTGGAATCTTCTGATACTATCGACAATGTCAAAT 156522 Query 391132 AAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGA 391191 ||| |||||||| |||||||| ||||||||||| || || ||| | |||||| | || | Sbjct 156521 CAAAGATTCAAGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTGATTTTCGCTGGCA 156462 Query 391192 AACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTC 391251 |||| | ||||| || | || | || |||||||| || | ||||| | ||||||| Sbjct 156461 AACAGTTGGAAGACGGCCGTACGCTCGCCGATTATAACATCCAGAAGGAGTCCACACTTC 156402 Query 391252 A 391252 | Sbjct 156401 A 156401 Score = 105 bits (116), Expect = 3e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| || || || || || || |||||||| || || |||||| Sbjct 156893 ATGCAGATTTTCGTCAAAACCCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCATCT 156834 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | | || || ||||| || ||||| |||||||||||||| ||| Sbjct 156833 GACACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCTGACCAA 156774 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | ||||| | || || || ||||| || || | || | || || || || Sbjct 156773 CAGCGTCTGATTTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCGCAGACTACAAC 156714 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | ||||| |||| || || Sbjct 156713 ATCCAGAAGGAATCAACTCTCCA 156691 >seq11 Length=468793 Score = 100 bits (110), Expect = 1e-15 Identities = 265/401 (66%), Gaps = 4/401 (1%) Strand=Plus/Minus Query 452091 CACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAG 452150 ||||||| || || || ||||||| |||||||| |||||||| || || ||| ||| Sbjct 67680 CACCTCTCTCACTAGGCATTGAAACTGCTGGTGGTATGATGACAAAGTTGATTCCTCGAA 67621 Query 452151 GAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAG 452210 || | ||||| || |||| | | || ||| || |||||||| || | Sbjct 67620 ACACAACCATTCCCACAAAGAAGACTGAGACGTTTTCGACGTTTTCAGATAACCAGCCTG 67561 Query 452211 GTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGA--GATAATAATAAACT 452268 | || |||||||||| || || || || || | ||| | || || || | Sbjct 67560 GCGTCCTCATTCAAGTGTACGAGGGTGAGCGC-CAGCG-CACTAAGGACAACAACTTGAT 67503 Query 452269 AGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAAT 452328 || |||| ||| | ||||||||| ||| | ||| |||||| |||||| | Sbjct 67502 GGGCAAATTCGAACTTACTGGCATTCCTCCCGCGCCCCGCGGAGTTCCTCAGATTGAAGT 67443 Query 452329 TACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGG 452388 ||| | |||| ||||||| |||||||| | || ||| || | || ||| |||| Sbjct 67442 TACATTTGATCTTGATGCCAATGGTATCATGAACGTGTCCGCTCTGGAGAAAGGTACTGG 67383 Query 452389 AAAATCAGAAAAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGA 452448 || || | || ||| || || ||||| || ||| | || || ||||| || || Sbjct 67382 CAAGTCCAACAAGATTGTCATCACCAATGACAAGGGTCGTCTGTCCAAGGAAGAGATCGA 67323 Query 452449 AAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATG 452489 ||||||| |||||| |||||||||||||| ||||| Sbjct 67322 GCGCATGGTAGCTGAAGCTGAAAAATTCAAGGAGAGTGATG 67282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975651824464040