Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq11 174 2e-38 seq3 138 1e-27 >seq11 Length=468793 Score = 174 bits (192), Expect = 2e-38 Identities = 210/283 (74%), Gaps = 2/283 (1%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| ||||| |||||||||||||| || || || || || || || ||||||||||| || Sbjct 68231 ATCAAAATCCTCACCACCCAAGTGGGTGTCACCAGCAGTGGCCTTCACTTCAAAGATTCC 68290 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 ||||||| | || | || |||||||| ||||| || || |||||||| || || || Sbjct 68291 GTCTTCAATAGTCAAGAGAGACACATCAAAGGTACCTCCGCCAAGGTCAAAGATCAGCAC 68350 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 || ||| | || ||||| || || |||||||| ||||| || || || || || Sbjct 68351 ATTGCGCTCGCCTTCAGCCTTCTTGTCAAGGCCGTACGCAATAGCTGCAGCAGTGGGCTC 68410 Query 7636 ATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 |||||| ||||| |||| ||| | || ||||| || | || || || |||||||| | Sbjct 68411 ATTAATGATACGCAAGA-TGTTGATTCCGGCAATGGTACCAGCGTCCTTGGTCGCTTGAC 68469 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTC 7737 | ||||| ||||||||||| || || || || || || || || Sbjct 68470 GCTGCGAGTCGTTAAAGTATGCTGGAACAGTGACTACAGCATC 68512 Score = 95.1 bits (104), Expect = 2e-14 Identities = 553/874 (63%), Gaps = 37/874 (4%) Strand=Plus/Plus Query 6524 TAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTCGCGTACTTTTCATCTTCA------ 6577 ||| |||| ||||||||||| || ||||| || | ||||||| || || Sbjct 67236 TAGCTTTCAAGACCATTCTTGGCATCGAC-----ACGAG-CCTTTTCAGCTGCATCACTC 67289 Query 6578 TCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCC 6637 || || | ||||| || || ||||| || || ||||| || || | | ||| Sbjct 67290 TCCTTGAATTTTTCAGCTTCAGCTACCATGCGCTCGATCTCTTCCTTGGACAGACGACCC 67349 Query 6638 TTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACA 6697 || ||||| || || |||||| | ||| || || || | | ||| ||| | ||| Sbjct 67350 TTGTCATTGGTGATGACAATCTTGTTGGACTTGCC--AGTACCTTTCTCCAGAGCGGACA 67407 Query 6698 --TTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCG 6755 |||| |||||||| ||||||| ||| || | || | ||| || || || | | Sbjct 67408 CGTTCATGATACCATTGGCATCAAGATCAAATGTAACTTCAATCTGAGGAACTCCGCGGG 67467 Query 6756 GTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCT 6815 | |||| ||||| || || | || ||| | || | || |||| ||| | | || Sbjct 67468 GCGCGGGAGGAATGCCAGTAAGTTCGAATTTGCCCATCAAGTTGTTGTCCTTAGTGCGCT 67527 Query 6816 TACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGA 6875 || ||||| || || |||| ||| || |||| || |||||| ||| || | Sbjct 67528 GGCGCTCACCCTCGTACACTTGAATGAGGACGCCAGGCTGGTTATCTGAAAACGTCGAAA 67587 Query 6876 AGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATAC 6935 | | | ||||| | ||||| || || |||| ||||| | | ||||| |||| Sbjct 67588 ACGTCTCAGTCTTCTTTGTGGGAATGGTTGTGTTTCGAGGAATCAACTTTGTCATCATAC 67647 Query 6936 CACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTC----- 6990 |||| |||||| | || || || ||||||| ||||| | || || | || Sbjct 67648 CACCAGCAGTTTCAATGCCTAGTGAGAGAGGTGCAACGTCAAGAAGCAAGATTTCGTTTG 67707 Query 6991 TTGA-ACAGAT-TCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTAT 7048 |||| ||| | || || || | ||||| || || || || | || || | Sbjct 67708 TTGACTTGGATGTAGT----ATCTCCAGACAAGATAGCAGCCTGTACAGCAGCGCCATTG 67763 Query 7049 GCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGAT 7108 || || ||||| || ||||| || |||| | | ||| || || || || | || | Sbjct 67764 GCTACAGCCTCGTCAGGGTTGATGCTTTTGCTGGGCGTTTTGCCATTGAAGTAGT-CGCT 67822 Query 7109 AA-CATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCAC 7167 || | | |||| || || || || || || || || | ||| || || | || Sbjct 67823 AATGAGATTCTGAACACGAGGAATCCGAGTAGAGCCTCCCACTAGAACAATGTCGTGGAC 67882 Query 7168 TTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA---TACATTT 7224 || || || |||| || | ||| || || ||||| | | || || Sbjct 67883 TTGAGACTTGTCGAGTTTGGCGTCAGTGAGGACGCGATCCACAGGCTGGAGAGTAGAT-- 67940 Query 7225 ACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATC 7284 ||||||| || || ||||| || ||||| ||||||||||| | || || | || Sbjct 67941 -CGGAACAGATCTTGGCATAGTTCTTCGAAACGGGCACGGGTAATCGGTGCGGAGTAGTC 67999 Query 7285 AACGCCGTCGTATAACGAATCAATTTCAATGGTTGT-TTGTGCCGTCGAAGATAACGTTC 7343 || ||| ||| | ||||||||||| |||| | |||| ||||| | | || | | | Sbjct 68000 AATGCCCTCGAACAACGAATCAATCTCAACGTTTGTGTTGTGTTG-AGCGGAGAGGGCAC 68058 Query 7344 GCTTTGCGCGCTCACACGCCGTTCGTAAACGACG 7377 |||| || || ||||| ||||| || | |||||| Sbjct 68059 GCTTCGCTCGTTCACAGGCCGTGCGAAGACGACG 68092 >seq3 Length=769506 Score = 138 bits (152), Expect = 1e-27 Identities = 357/538 (66%), Gaps = 7/538 (1%) Strand=Plus/Minus Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||||||||| ||||| || ||||| ||| || |||| ||| | | || ||| Sbjct 485776 TCCTCAAAACGAGCACGAGTCATGGACAGGGTGAAGTCCTCGCCATCGAAGAGAGAGTCA 485717 Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAA-GATAACGTTCGCTTTGCGCGCTCACACGCCGT 7365 || || ||||| | || || | || || | || ||||| || ||||| || || || Sbjct 485716 ATCTCGATGGTAGCCTGGGC-GCCGCTTGACAGGGTACGCTTGGCACGCTCGCAAGCAGT 485658 Query 7366 TCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAA 7425 ||| | | || || ||||| | | ||| | ||| ||||| || || | || Sbjct 485657 TCGAAGTCTTCGCAGAGCACGGGCATCGCCGCTTAGATCCTTCTTGGTCTTGCGGGTGAA 485598 Query 7426 CTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTAT 7484 || | | |||| |||| ||| ||| |||||||| | |||||| | ||| || | Sbjct 485597 TTCCTTCTTGCAGTGGTCGAGCAAGT-TCGTGTCGAAATCCTGACCACCAAGGTGGGTGT 485539 Query 7485 CCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAA 7544 | || ||||| || ||||| || | ||| || | ||||| | | || ||||| | Sbjct 485538 CACCAGCGGTGGCCTTGACAGTGAAAACACCGCCCTGGATGTTAAGGAGAGACACATCGA 485479 Query 7545 ACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCG- 7603 | ||||||||||| || ||| | || || ||||| || | || || | | Sbjct 485478 AGGTACCACCACCAAGATCATAGATCAGAACGTTACGCTCCTTCTCAGACTTGCCAGAGC 485419 Query 7604 --AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGC 7661 ||||| || ||||| || || || || ||||| ||||| ||||| || ||| |||| Sbjct 485418 CCAGACCATATGCGATGGCGGCGGCAGTGGGTTCGTTAATGATACGGAGGACGTTGAGGC 485359 Query 7662 CAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGA 7721 ||||||| | | ||||| || || || || || || ||||| |||||||| || | Sbjct 485358 CAGCAATGGCACCGGCATCCTTGGTAGCCTGACGCTGGTTGTCGTTGAAGTAGGCAGGAA 485299 Query 7722 CCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779 | || | ||| || | | ||| ||||| || || | | || || || |||||||| Sbjct 485298 CAGTGATGACGGCCTTCTCGACCTTCTTGCCAAGCTTGGTCTCGGCAATCTCTTTCAT 485241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635111920009200