Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq11 174 2e-38
seq3 138 1e-27
>seq11
Length=468793
Score = 174 bits (192), Expect = 2e-38
Identities = 210/283 (74%), Gaps = 2/283 (1%)
Strand=Plus/Plus
Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515
||| ||||| |||||||||||||| || || || || || || || ||||||||||| ||
Sbjct 68231 ATCAAAATCCTCACCACCCAAGTGGGTGTCACCAGCAGTGGCCTTCACTTCAAAGATTCC 68290
Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575
||||||| | || | || |||||||| ||||| || || |||||||| || || ||
Sbjct 68291 GTCTTCAATAGTCAAGAGAGACACATCAAAGGTACCTCCGCCAAGGTCAAAGATCAGCAC 68350
Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635
|| ||| | || ||||| || || |||||||| ||||| || || || || ||
Sbjct 68351 ATTGCGCTCGCCTTCAGCCTTCTTGTCAAGGCCGTACGCAATAGCTGCAGCAGTGGGCTC 68410
Query 7636 ATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694
|||||| ||||| |||| ||| | || ||||| || | || || || |||||||| |
Sbjct 68411 ATTAATGATACGCAAGA-TGTTGATTCCGGCAATGGTACCAGCGTCCTTGGTCGCTTGAC 68469
Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTC 7737
| ||||| ||||||||||| || || || || || || || ||
Sbjct 68470 GCTGCGAGTCGTTAAAGTATGCTGGAACAGTGACTACAGCATC 68512
Score = 95.1 bits (104), Expect = 2e-14
Identities = 553/874 (63%), Gaps = 37/874 (4%)
Strand=Plus/Plus
Query 6524 TAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTCGCGTACTTTTCATCTTCA------ 6577
||| |||| ||||||||||| || ||||| || | ||||||| || ||
Sbjct 67236 TAGCTTTCAAGACCATTCTTGGCATCGAC-----ACGAG-CCTTTTCAGCTGCATCACTC 67289
Query 6578 TCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCC 6637
|| || | ||||| || || ||||| || || ||||| || || | | |||
Sbjct 67290 TCCTTGAATTTTTCAGCTTCAGCTACCATGCGCTCGATCTCTTCCTTGGACAGACGACCC 67349
Query 6638 TTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACA 6697
|| ||||| || || |||||| | ||| || || || | | ||| ||| | |||
Sbjct 67350 TTGTCATTGGTGATGACAATCTTGTTGGACTTGCC--AGTACCTTTCTCCAGAGCGGACA 67407
Query 6698 --TTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCG 6755
|||| |||||||| ||||||| ||| || | || | ||| || || || | |
Sbjct 67408 CGTTCATGATACCATTGGCATCAAGATCAAATGTAACTTCAATCTGAGGAACTCCGCGGG 67467
Query 6756 GTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCT 6815
| |||| ||||| || || | || ||| | || | || |||| ||| | | ||
Sbjct 67468 GCGCGGGAGGAATGCCAGTAAGTTCGAATTTGCCCATCAAGTTGTTGTCCTTAGTGCGCT 67527
Query 6816 TACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGA 6875
|| ||||| || || |||| ||| || |||| || |||||| ||| || |
Sbjct 67528 GGCGCTCACCCTCGTACACTTGAATGAGGACGCCAGGCTGGTTATCTGAAAACGTCGAAA 67587
Query 6876 AGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATAC 6935
| | | ||||| | ||||| || || |||| ||||| | | ||||| ||||
Sbjct 67588 ACGTCTCAGTCTTCTTTGTGGGAATGGTTGTGTTTCGAGGAATCAACTTTGTCATCATAC 67647
Query 6936 CACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTC----- 6990
|||| |||||| | || || || ||||||| ||||| | || || | ||
Sbjct 67648 CACCAGCAGTTTCAATGCCTAGTGAGAGAGGTGCAACGTCAAGAAGCAAGATTTCGTTTG 67707
Query 6991 TTGA-ACAGAT-TCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTAT 7048
|||| ||| | || || || | ||||| || || || || | || || |
Sbjct 67708 TTGACTTGGATGTAGT----ATCTCCAGACAAGATAGCAGCCTGTACAGCAGCGCCATTG 67763
Query 7049 GCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGAT 7108
|| || ||||| || ||||| || |||| | | ||| || || || || | || |
Sbjct 67764 GCTACAGCCTCGTCAGGGTTGATGCTTTTGCTGGGCGTTTTGCCATTGAAGTAGT-CGCT 67822
Query 7109 AA-CATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCAC 7167
|| | | |||| || || || || || || || || | ||| || || | ||
Sbjct 67823 AATGAGATTCTGAACACGAGGAATCCGAGTAGAGCCTCCCACTAGAACAATGTCGTGGAC 67882
Query 7168 TTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA---TACATTT 7224
|| || || |||| || | ||| || || ||||| | | || ||
Sbjct 67883 TTGAGACTTGTCGAGTTTGGCGTCAGTGAGGACGCGATCCACAGGCTGGAGAGTAGAT-- 67940
Query 7225 ACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATC 7284
||||||| || || ||||| || ||||| ||||||||||| | || || | ||
Sbjct 67941 -CGGAACAGATCTTGGCATAGTTCTTCGAAACGGGCACGGGTAATCGGTGCGGAGTAGTC 67999
Query 7285 AACGCCGTCGTATAACGAATCAATTTCAATGGTTGT-TTGTGCCGTCGAAGATAACGTTC 7343
|| ||| ||| | ||||||||||| |||| | |||| ||||| | | || | | |
Sbjct 68000 AATGCCCTCGAACAACGAATCAATCTCAACGTTTGTGTTGTGTTG-AGCGGAGAGGGCAC 68058
Query 7344 GCTTTGCGCGCTCACACGCCGTTCGTAAACGACG 7377
|||| || || ||||| ||||| || | ||||||
Sbjct 68059 GCTTCGCTCGTTCACAGGCCGTGCGAAGACGACG 68092
>seq3
Length=769506
Score = 138 bits (152), Expect = 1e-27
Identities = 357/538 (66%), Gaps = 7/538 (1%)
Strand=Plus/Minus
Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306
||||||||||| ||||| || ||||| ||| || |||| ||| | | || |||
Sbjct 485776 TCCTCAAAACGAGCACGAGTCATGGACAGGGTGAAGTCCTCGCCATCGAAGAGAGAGTCA 485717
Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAA-GATAACGTTCGCTTTGCGCGCTCACACGCCGT 7365
|| || ||||| | || || | || || | || ||||| || ||||| || || ||
Sbjct 485716 ATCTCGATGGTAGCCTGGGC-GCCGCTTGACAGGGTACGCTTGGCACGCTCGCAAGCAGT 485658
Query 7366 TCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAA 7425
||| | | || || ||||| | | ||| | ||| ||||| || || | ||
Sbjct 485657 TCGAAGTCTTCGCAGAGCACGGGCATCGCCGCTTAGATCCTTCTTGGTCTTGCGGGTGAA 485598
Query 7426 CTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTAT 7484
|| | | |||| |||| ||| ||| |||||||| | |||||| | ||| || |
Sbjct 485597 TTCCTTCTTGCAGTGGTCGAGCAAGT-TCGTGTCGAAATCCTGACCACCAAGGTGGGTGT 485539
Query 7485 CCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAA 7544
| || ||||| || ||||| || | ||| || | ||||| | | || ||||| |
Sbjct 485538 CACCAGCGGTGGCCTTGACAGTGAAAACACCGCCCTGGATGTTAAGGAGAGACACATCGA 485479
Query 7545 ACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCG- 7603
| ||||||||||| || ||| | || || ||||| || | || || | |
Sbjct 485478 AGGTACCACCACCAAGATCATAGATCAGAACGTTACGCTCCTTCTCAGACTTGCCAGAGC 485419
Query 7604 --AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGC 7661
||||| || ||||| || || || || ||||| ||||| ||||| || ||| ||||
Sbjct 485418 CCAGACCATATGCGATGGCGGCGGCAGTGGGTTCGTTAATGATACGGAGGACGTTGAGGC 485359
Query 7662 CAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGA 7721
||||||| | | ||||| || || || || || || ||||| |||||||| || |
Sbjct 485358 CAGCAATGGCACCGGCATCCTTGGTAGCCTGACGCTGGTTGTCGTTGAAGTAGGCAGGAA 485299
Query 7722 CCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779
| || | ||| || | | ||| ||||| || || | | || || || ||||||||
Sbjct 485298 CAGTGATGACGGCCTTCTCGACCTTCTTGCCAAGCTTGGTCTCGGCAATCTCTTTCAT 485241
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635111920009200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |