Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq5 300 2e-76 seq9 96.9 4e-15 seq96 87.8 2e-12 >seq5 Length=693879 Score = 300 bits (332), Expect = 2e-76 Identities = 1130/1742 (65%), Gaps = 49/1742 (3%) Strand=Plus/Plus Query 105596 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTG 105655 |||||||| || |||||||| || ||||||| || | ||||| |||| || |||| Sbjct 202363 TAGTACATGCCCGTCTTGAGGCCCAGTTTCCAGCCGGTAAAGTGCATGGAAGTGATCTTG 202422 Query 105656 GACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAGCGACCA 105715 ||| || ||| | |||| || || | | || |||||| ||||| |||| Sbjct 202423 CCCATAGTGGGATCCTTCATGTGAATGTTAAGAGACTGGGACTGGTCGATGAAAGCACCA 202482 Query 105716 CGTTGTGCCGCCATATCAATGACATCCTTCATCTTGA--TTTCCCACACTGTGCGGTAGA 105773 || | || ||||| | | ||| | || | || ||||||| || || ||||| Sbjct 202483 CGGTCAGCAGCCATCTGCACGACGTG--TCGTTGAGAAATTTCCCAAACAGTTTTGTAGA 202540 Query 105774 GATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCTTGACCA 105833 || ||||| || | ||||| | | |||||| ||||| ||||| | | | | | Sbjct 202541 GAGCTTTGATGTCGGCCGGGATGTTGGGGATATTCTGAATGGAACCGTTCTC---GGCAA 202597 Query 105834 TGAGA---TCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGAT 105890 ||| | | ||||||| | | |||||||| || || | |||||| || | || Sbjct 202598 TGATACGGTTCTTCATAGCATCAGACCAAAGGCCCATGTCGACGAGATCTTTCAGCAGCC 202657 Query 105891 GCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGT 105950 |||||||| | || || || || ||| | | | || ||||| | ||||| Sbjct 202658 AGGGGTTGACAACCTGGAATTCACCTGCCAGGACACGGCGTTGGTAAATGTTGGACGTGT 202717 Query 105951 AGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTG 106010 | || || ||||| ||||| ||||| | || || | ||| || || || ||||| || | Sbjct 202718 AAGGCTCGAAGCACTCATTGTTACCTAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGGG 202777 Query 106011 CCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGT 106070 | | || || ||| |||| || | |||||||| | ||||| ||| || ||| | Sbjct 202778 CGAGCAGCAGTGAGTTGCGAATTCCATGCTCCTTGATCTGCTCCTTCAGACTATTCCACT 202837 Query 106071 CGTAGTTG--AGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGT 106128 | || | || || ||||| | ||||||| ||||| ||||| | || | ||| | Sbjct 202838 CCCAGAGGTCAGAA-GGCTTCACGT-CCCACATGTCAAACTGAAGAATGCCCTCGGAGGC 202895 Query 106129 GGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTC-ACAGCTCGCCT 106187 |||||| |||||||| || || | ||||| | | |||||||| |||| || Sbjct 202896 GGGAGAGCCCTCAAAGGTAGAGTAAGGTCCTTGCTCCTTGGCCAATTCGACAGAG-GCAG 202954 Query 106188 CCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTG 106247 |||| || || || ||||| ||||| || | || | ||| ||| ||| | Sbjct 202955 TGAGGGCAGCATGGTAGATGGTCTCAAATATCTGCTTGTTGAGCTCACGGGCCTCAGGGG 203014 Query 106248 AATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAA 106307 | ||||||| ||| | || || | || |||||||| || || || | ||||| Sbjct 203015 ACTCAAATGGCATGCGCAAGGCAAGGAAAGCGTCGGCGAGACCCTGGACGCCAACACCAA 203074 Query 106308 TAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAA 106367 | || | ||||||||| || || || || || ||||| || || |||| Sbjct 203075 TCGGCCGGTGTCGCATGTTGCTGTTCCGGGCCTCCTGGACGGGGTAGTGGTTGACATCAA 203134 Query 106368 TGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAA 106427 ||| || ||| || || ||| | || |||| || || || || | | || Sbjct 203135 TGATTCTGTTCAGGTTGCGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGT 203194 Query 106428 AAGTGCGAGTCTCTTCATTGACATACTTTGGAAGG----GCGATTGATGCCAAATTGCAA 106483 | ||| ||| | | | | ||| || ||| || | || ||||| |||||| Sbjct 203195 A---GCGTCCCTCGTTGTAGTC-TACGAAGGCAGGCAGAGCCAGAGAGGCCAAGTTGCAA 203250 Query 106484 ACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTA 106543 ||||| |||||| | | |||||| | |||||| || || | |||||| || Sbjct 203251 ACAGCGACCTCATCAGGGGCAGAGTACTCGACAATTTCCGTGCAAAGGTTGGAGCTGCGG 203310 Query 106544 ATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAG 106603 || || ||||| ||||| ||||| ||||| ||||||| |||||||||||||||||| | Sbjct 203311 ATTGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTAGAGCATGAAA 203370 Query 106604 GGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTAC 106662 || | |||||||| ||||| | || || || | | ||| | | || | ||| | Sbjct 203371 GGATTACCCGTCTCTGTCTGGGCCTCCAGGATGGAGTACCAGAGCTTCTG-GGCACG--- 203426 Query 106663 AATGG-CGTTGGCCCGT--CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTC 106719 ||||| || | || | ||||| ||| |||||| ||||| || ||||||||||| Sbjct 203427 AATGGTCGCACGACCCTTGCCCTCACGCTCATACTTTTCATAGAGAGCCTCAAACTCCTC 203486 Query 106720 ACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCAC 106778 || ||| | || || || || || || || || | |||| ||| | ||| Sbjct 203487 GCCGTAGCAGTCAGCCAGGCC-GGGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGT 203545 Query 106779 CCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA- 106837 || ||| || |||||||||||||| || |||||||| || | || | ||| | | Sbjct 203546 TCTTCTCGACGCGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAG 203605 Query 106838 CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCG 106897 ||| || | ||||| | || || || ||| || ||||||||||| | | ||| ||| Sbjct 203606 CACGGA-CTTCTTCCTTGCCGTGATTCTTTCGCAAATCAAGGAACTCAAACACATCGGCG 203664 Query 106898 TGCCATGGCT-CAAG---ATAG--ACTGCGATAGATCCCTTTCGACGCCCAGCTTGATTT 106951 ||||| |||| |||| || | | ||| || || ||| | | ||| | || | Sbjct 203665 TGCCAAGGCTCCAAGTAAATGGCAAAAGCGCCAGGTCGCTT--GTTG-CCACCCTGGTCG 203721 Query 106952 ACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCA 107011 ||||| | || ||| ||| || || |||||||| ||||| | ||||| || || Sbjct 203722 ACATATCTGGCCGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTGGACGTCCCG 203781 Query 107012 TTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 107071 || || || ||| || | |||| | | |||| | || || ||||| Sbjct 203782 TTGGTGCCGGCAATGTAGGAGCCAGTGGCGCGAATGCGGTGGACATTCAAGCCGATACCA 203841 Query 107072 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 107131 |||||| ||| ||||| || || | | || || ||||||| || | ||| | Sbjct 203842 CCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTCGATGCTG 203901 Query 107132 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 107191 |||||||| || ||| ||||||||| |||| ||| | ||||| ||||| ||| Sbjct 203902 TCCTCCTTCATGTCGACGAGGAAGCAAGACGACAGCTGACATTGAGGTGTGCCAGCGTTG 203961 Query 107192 AAGAGGGTTGGTGTTGCGTGAATGAACA--TACCTTGGGACATCTTGTCGTATGTCTCCA 107249 || || || |||| ||||| |||| | | || |||||| | ||| || |||| Sbjct 203962 AATAGTGTGGGTGAGGCGTGTGTGAAGAGTTTGCT--GGACATGAGATGGTAGGTTTCCA 204019 Query 107250 AGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGG 107309 ||| ||||| | || || ||| |||| || |||||||||| ||||| |||| Sbjct 204020 GGACTCGCTCAATATTGTCTCCCCAGATCCCGACAGCGACACGCATAATCATGTGCTGGG 204079 Query 107310 GT 107311 || Sbjct 204080 GT 204081 >seq9 Length=558614 Score = 96.9 bits (106), Expect = 4e-15 Identities = 182/262 (69%), Gaps = 8/262 (3%) Strand=Plus/Plus Query 9371 GGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 9430 |||||| || ||||||||||| | || || ||| ||| | ||| | |||| || Sbjct 366178 GGCATCGATTTCATCAATGAAAATGATGCAGGGTGCATTCTTGCGACCTTCGGCAAATAG 366237 Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-AC 9489 ||| || |||| | | || |||||||||||||| || ||||| | | || || Sbjct 366238 ATCTCGGACCCGTGAAGGACCAACACCAACAAACATTTCTACAAATTCGGAACCGCTTAC 366297 Query 9490 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9549 | | ||| || ||| ||||||||| || ||||| || | ||| || || || | Sbjct 366298 GCTAAA-GAATGGAACACCAGATTCACCTGCCGTGGCTTTAGCAATAAGCGTTTTGCCAG 366356 Query 9550 TACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC--ACTTC-CAAAGT 9606 ||||||| |||||||||| || || || ||||||||||| || |||| |||| | Sbjct 366357 TACCTGGAGGTCCCGCGAGGATAGCTCCGCGAGGAATCTTGGCTCCTAGCTTCTCAAACT 366416 Query 9607 ATCTCTCAGGTTGCTTGAGAAA 9628 ||||||| || |||||||| Sbjct 366417 ---TCTCAGGCTGTTTGAGAAA 366435 >seq96 Length=87723 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || ||| ||||||||||| || || || | ||| || |||||| || || Sbjct 52272 GGCAAAGTCTGTGTGCAGACCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACC 52331 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGA 117391 ||||| | || |||||||||| ||| | |||| ||| || | ||| |||||| | Sbjct 52332 GGGCATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCA-AAAGCACCGCTGAAGAAAA 52390 Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCA 117450 |||| ||||| ||||| |||| | ||||| ||||||| | || |||||| | | Sbjct 52391 TACCTTCCACGGCAGCAAAAGCAACCAAGCGCTGGGCGAAGCTG-GATTCTTTGTCCTGA 52449 Query 117451 AACCATTTCATTGCCCATTTCGCCTTCTT 117479 | ||| || ||||| | |||||||| Sbjct 52450 ATCCAACGGATAGCCCAATCTGCCTTCTT 52478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589961404381200