Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq5 300 2e-76
seq9 96.9 4e-15
seq96 87.8 2e-12
>seq5
Length=693879
Score = 300 bits (332), Expect = 2e-76
Identities = 1130/1742 (65%), Gaps = 49/1742 (3%)
Strand=Plus/Plus
Query 105596 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTG 105655
|||||||| || |||||||| || ||||||| || | ||||| |||| || ||||
Sbjct 202363 TAGTACATGCCCGTCTTGAGGCCCAGTTTCCAGCCGGTAAAGTGCATGGAAGTGATCTTG 202422
Query 105656 GACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAGCGACCA 105715
||| || ||| | |||| || || | | || |||||| ||||| ||||
Sbjct 202423 CCCATAGTGGGATCCTTCATGTGAATGTTAAGAGACTGGGACTGGTCGATGAAAGCACCA 202482
Query 105716 CGTTGTGCCGCCATATCAATGACATCCTTCATCTTGA--TTTCCCACACTGTGCGGTAGA 105773
|| | || ||||| | | ||| | || | || ||||||| || || |||||
Sbjct 202483 CGGTCAGCAGCCATCTGCACGACGTG--TCGTTGAGAAATTTCCCAAACAGTTTTGTAGA 202540
Query 105774 GATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCTTGACCA 105833
|| ||||| || | ||||| | | |||||| ||||| ||||| | | | | |
Sbjct 202541 GAGCTTTGATGTCGGCCGGGATGTTGGGGATATTCTGAATGGAACCGTTCTC---GGCAA 202597
Query 105834 TGAGA---TCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGAT 105890
||| | | ||||||| | | |||||||| || || | |||||| || | ||
Sbjct 202598 TGATACGGTTCTTCATAGCATCAGACCAAAGGCCCATGTCGACGAGATCTTTCAGCAGCC 202657
Query 105891 GCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGT 105950
|||||||| | || || || || ||| | | | || ||||| | |||||
Sbjct 202658 AGGGGTTGACAACCTGGAATTCACCTGCCAGGACACGGCGTTGGTAAATGTTGGACGTGT 202717
Query 105951 AGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTG 106010
| || || ||||| ||||| ||||| | || || | ||| || || || ||||| || |
Sbjct 202718 AAGGCTCGAAGCACTCATTGTTACCTAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGGG 202777
Query 106011 CCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGT 106070
| | || || ||| |||| || | |||||||| | ||||| ||| || ||| |
Sbjct 202778 CGAGCAGCAGTGAGTTGCGAATTCCATGCTCCTTGATCTGCTCCTTCAGACTATTCCACT 202837
Query 106071 CGTAGTTG--AGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGT 106128
| || | || || ||||| | ||||||| ||||| ||||| | || | ||| |
Sbjct 202838 CCCAGAGGTCAGAA-GGCTTCACGT-CCCACATGTCAAACTGAAGAATGCCCTCGGAGGC 202895
Query 106129 GGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTC-ACAGCTCGCCT 106187
|||||| |||||||| || || | ||||| | | |||||||| |||| ||
Sbjct 202896 GGGAGAGCCCTCAAAGGTAGAGTAAGGTCCTTGCTCCTTGGCCAATTCGACAGAG-GCAG 202954
Query 106188 CCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTG 106247
|||| || || || ||||| ||||| || | || | ||| ||| ||| |
Sbjct 202955 TGAGGGCAGCATGGTAGATGGTCTCAAATATCTGCTTGTTGAGCTCACGGGCCTCAGGGG 203014
Query 106248 AATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAA 106307
| ||||||| ||| | || || | || |||||||| || || || | |||||
Sbjct 203015 ACTCAAATGGCATGCGCAAGGCAAGGAAAGCGTCGGCGAGACCCTGGACGCCAACACCAA 203074
Query 106308 TAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAA 106367
| || | ||||||||| || || || || || ||||| || || ||||
Sbjct 203075 TCGGCCGGTGTCGCATGTTGCTGTTCCGGGCCTCCTGGACGGGGTAGTGGTTGACATCAA 203134
Query 106368 TGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAA 106427
||| || ||| || || ||| | || |||| || || || || | | ||
Sbjct 203135 TGATTCTGTTCAGGTTGCGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGT 203194
Query 106428 AAGTGCGAGTCTCTTCATTGACATACTTTGGAAGG----GCGATTGATGCCAAATTGCAA 106483
| ||| ||| | | | | ||| || ||| || | || ||||| ||||||
Sbjct 203195 A---GCGTCCCTCGTTGTAGTC-TACGAAGGCAGGCAGAGCCAGAGAGGCCAAGTTGCAA 203250
Query 106484 ACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTA 106543
||||| |||||| | | |||||| | |||||| || || | |||||| ||
Sbjct 203251 ACAGCGACCTCATCAGGGGCAGAGTACTCGACAATTTCCGTGCAAAGGTTGGAGCTGCGG 203310
Query 106544 ATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAG 106603
|| || ||||| ||||| ||||| ||||| ||||||| |||||||||||||||||| |
Sbjct 203311 ATTGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTAGAGCATGAAA 203370
Query 106604 GGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTAC 106662
|| | |||||||| ||||| | || || || | | ||| | | || | ||| |
Sbjct 203371 GGATTACCCGTCTCTGTCTGGGCCTCCAGGATGGAGTACCAGAGCTTCTG-GGCACG--- 203426
Query 106663 AATGG-CGTTGGCCCGT--CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTC 106719
||||| || | || | ||||| ||| |||||| ||||| || |||||||||||
Sbjct 203427 AATGGTCGCACGACCCTTGCCCTCACGCTCATACTTTTCATAGAGAGCCTCAAACTCCTC 203486
Query 106720 ACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCAC 106778
|| ||| | || || || || || || || || | |||| ||| | |||
Sbjct 203487 GCCGTAGCAGTCAGCCAGGCC-GGGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGT 203545
Query 106779 CCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA- 106837
|| ||| || |||||||||||||| || |||||||| || | || | ||| | |
Sbjct 203546 TCTTCTCGACGCGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAG 203605
Query 106838 CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCG 106897
||| || | ||||| | || || || ||| || ||||||||||| | | ||| |||
Sbjct 203606 CACGGA-CTTCTTCCTTGCCGTGATTCTTTCGCAAATCAAGGAACTCAAACACATCGGCG 203664
Query 106898 TGCCATGGCT-CAAG---ATAG--ACTGCGATAGATCCCTTTCGACGCCCAGCTTGATTT 106951
||||| |||| |||| || | | ||| || || ||| | | ||| | || |
Sbjct 203665 TGCCAAGGCTCCAAGTAAATGGCAAAAGCGCCAGGTCGCTT--GTTG-CCACCCTGGTCG 203721
Query 106952 ACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCA 107011
||||| | || ||| ||| || || |||||||| ||||| | ||||| || ||
Sbjct 203722 ACATATCTGGCCGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTGGACGTCCCG 203781
Query 107012 TTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 107071
|| || || ||| || | |||| | | |||| | || || |||||
Sbjct 203782 TTGGTGCCGGCAATGTAGGAGCCAGTGGCGCGAATGCGGTGGACATTCAAGCCGATACCA 203841
Query 107072 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 107131
|||||| ||| ||||| || || | | || || ||||||| || | ||| |
Sbjct 203842 CCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTCGATGCTG 203901
Query 107132 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 107191
|||||||| || ||| ||||||||| |||| ||| | ||||| ||||| |||
Sbjct 203902 TCCTCCTTCATGTCGACGAGGAAGCAAGACGACAGCTGACATTGAGGTGTGCCAGCGTTG 203961
Query 107192 AAGAGGGTTGGTGTTGCGTGAATGAACA--TACCTTGGGACATCTTGTCGTATGTCTCCA 107249
|| || || |||| ||||| |||| | | || |||||| | ||| || ||||
Sbjct 203962 AATAGTGTGGGTGAGGCGTGTGTGAAGAGTTTGCT--GGACATGAGATGGTAGGTTTCCA 204019
Query 107250 AGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGG 107309
||| ||||| | || || ||| |||| || |||||||||| ||||| ||||
Sbjct 204020 GGACTCGCTCAATATTGTCTCCCCAGATCCCGACAGCGACACGCATAATCATGTGCTGGG 204079
Query 107310 GT 107311
||
Sbjct 204080 GT 204081
>seq9
Length=558614
Score = 96.9 bits (106), Expect = 4e-15
Identities = 182/262 (69%), Gaps = 8/262 (3%)
Strand=Plus/Plus
Query 9371 GGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 9430
|||||| || ||||||||||| | || || ||| ||| | ||| | |||| ||
Sbjct 366178 GGCATCGATTTCATCAATGAAAATGATGCAGGGTGCATTCTTGCGACCTTCGGCAAATAG 366237
Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-AC 9489
||| || |||| | | || |||||||||||||| || ||||| | | || ||
Sbjct 366238 ATCTCGGACCCGTGAAGGACCAACACCAACAAACATTTCTACAAATTCGGAACCGCTTAC 366297
Query 9490 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9549
| | ||| || ||| ||||||||| || ||||| || | ||| || || || |
Sbjct 366298 GCTAAA-GAATGGAACACCAGATTCACCTGCCGTGGCTTTAGCAATAAGCGTTTTGCCAG 366356
Query 9550 TACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC--ACTTC-CAAAGT 9606
||||||| |||||||||| || || || ||||||||||| || |||| |||| |
Sbjct 366357 TACCTGGAGGTCCCGCGAGGATAGCTCCGCGAGGAATCTTGGCTCCTAGCTTCTCAAACT 366416
Query 9607 ATCTCTCAGGTTGCTTGAGAAA 9628
||||||| || ||||||||
Sbjct 366417 ---TCTCAGGCTGTTTGAGAAA 366435
>seq96
Length=87723
Score = 87.8 bits (96), Expect = 2e-12
Identities = 148/209 (71%), Gaps = 4/209 (2%)
Strand=Plus/Plus
Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332
|||||| || ||| ||||||||||| || || || | ||| || |||||| || ||
Sbjct 52272 GGCAAAGTCTGTGTGCAGACCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGACC 52331
Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGA 117391
||||| | || |||||||||| ||| | |||| ||| || | ||| |||||| |
Sbjct 52332 GGGCATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCA-AAAGCACCGCTGAAGAAAA 52390
Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCA 117450
|||| ||||| ||||| |||| | ||||| ||||||| | || |||||| | |
Sbjct 52391 TACCTTCCACGGCAGCAAAAGCAACCAAGCGCTGGGCGAAGCTG-GATTCTTTGTCCTGA 52449
Query 117451 AACCATTTCATTGCCCATTTCGCCTTCTT 117479
| ||| || ||||| | ||||||||
Sbjct 52450 ATCCAACGGATAGCCCAATCTGCCTTCTT 52478
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589961404381200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |