Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5 100 3e-16 >seq5 Length=693879 Score = 100 bits (110), Expect = 3e-16 Identities = 198/293 (68%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 48156 CCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATA 48215 || || ||||| || || ||||||| | |||||| | | || | || | |||| Sbjct 203506 CCGGGGCATTCGTTGGGGCACATCAGAGTCCAATCACCGTTCTTCTCGACGCGCTTCATG 203565 Query 48216 AATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCA 48275 || | ||| || ||||||||||| | |||||||| | || | | |||||| ||||| Sbjct 203566 AAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCACGAGCACGGACTTCTTCCTTGCCG 203625 Query 48276 CTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATT 48335 |||| || | ||||| || || | | ||| || ||||| || || || || || Sbjct 203626 TGATTCTTTCGCAAATCAAGGAACTCAAACACATCGGCGTGCCAAGGCTCCAAGTAAATG 203685 Query 48336 GCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAA 48395 || | | || ||||| || || || || || || | ||||||||| || ||||| || Sbjct 203686 GCAAAAGCGCCAGGTCGCTTGTTGCCACCCTGGTCGACATATCTGGCCGTGTTGTTGAAA 203745 Query 48396 ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATA 48448 || | | ||| || | | |||||| || | || ||||| || | ||| || Sbjct 203746 ACACGAAGCATGGGAATGACACCATTGGACGTCCCGTTGGTGCCGGCAATGTA 203798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562090320673200