Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq11 107 2e-17
seq20 87.8 1e-11
>seq11
Length=468793
Score = 107 bits (118), Expect = 2e-17
Identities = 320/490 (65%), Gaps = 13/490 (3%)
Strand=Plus/Minus
Query 552109 AAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGT 552168
|||| || || ||||| || || || || ||||| | |||||| ||| | |
Sbjct 67884 AAGTCCACGACATTGTTCTAGTGGGAGGCTCTACTCGGATTCCTCGTGTTCAGAATCTCA 67825
Query 552169 TAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTG 552228
| || || |||||||| |||| | |||| | || || || |||||||| |
Sbjct 67824 TTAGCGACTACTTCAATGGCAAAACGCCCAGCAAAAGCATCAACCCTGACGAGGCTGTAG 67765
Query 552229 CCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTG-ATGAAAAACTACAA 552287
|| |||| || || | || || ||||| | |||||| | ||| || || | ||||
Sbjct 67764 CCAATGGCGCTGCTGTACAGGCTGCTATCTTGTCTGGAGATACTACATCCAAGTCAACAA 67705
Query 552288 A--ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTA 552345
| | || | ||| | || ||| | ||||| || || || | ||||| | ||| ||||
Sbjct 67704 ACGAAATCTTGCTTCTTGACGTTGCACCTCTCTCACTAGGCATTGAAACTGCTGGTGGTA 67645
Query 552346 TTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTT 552405
| ||||| || | || | |||| || || ||||| || || || ||||
Sbjct 67644 TGATGACAAAGTTGATTCCTCGAAACACAACCATTCCCACAAAGAAGACTGAGACGTTTT 67585
Query 552406 CTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAAT 552465
| |||| ||||||||| || ||| || |||||| | | || || || | |
Sbjct 67584 CGACGTTTTCAGATAACCAGCCTGGCGTCCTCATTCAAGTGTACGAGGGTGAGCGCCAGC 67525
Query 552466 TCACTAAAGATAATAATCAACTTGGT-----ACTTTTAATTTAGAAGGTATTCCTCCTGC 552520
|||||| || || ||||||| | | || || ||| || |||||||| ||
Sbjct 67524 GCACTAAGGACAA----CAACTTGATGGGCAAATTCGAACTTACT-GGCATTCCTCCCGC 67470
Query 552521 TCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAA 552580
|| || ||||| || || ||||||||||| || ||| | ||||||||||| || ||||
Sbjct 67469 GCCCCGCGGAGTTCCTCAGATTGAAGTTACATTTGATCTTGATGCCAATGGTATCATGAA 67410
Query 552581 TGTGACTGCT 552590
||| | |||
Sbjct 67409 CGTGTCCGCT 67400
>seq20
Length=366416
Score = 87.8 bits (96), Expect = 1e-11
Identities = 153/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315
||| ||||| |||||||| || || ||| || || ||||| || || || || |
Sbjct 156675 GAGGCGGAGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCG 156734
Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375
|| ||||| || ||||| |||||||| || | || || |||||||||||||| ||
Sbjct 156735 GCCGTCCTCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGTCAGGAGGAATTCCCTC 156794
Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAG 563434
|| || ||||| || || || || || || |||| ||| | | || ||||
Sbjct 156795 CTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCAG-ATGACTCGACCTCAAGAG 156853
Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| | || || || ||||| ||||| |||||||| |||||
Sbjct 156854 TGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATCTGCAT 156893
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029156913738700
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |