Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq82 107 2e-18 >seq82 Length=110760 Score = 107 bits (118), Expect = 2e-18 Identities = 193/280 (69%), Gaps = 8/280 (3%) Strand=Plus/Minus Query 30009 GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGAT 30068 ||| || ||||| || |||||||| | ||| || |||||| |||| || ||||| Sbjct 76312 GTGACAGGGAGGCAGGGCCATGAGATGTAGATCTCGGGCGTTCCAAGCGCTCATAATGAT 76253 Query 30069 GCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTC---CACGGCGTTTTGC-AGCTGATCCA 30124 ||||||||| | || |||||| |||| ||| |||| || || ||||| || | Sbjct 76252 GCGCCTGTCGTACGGCTTGTTCTTGATTTTGTCTATCACGTCG----GCGAGCTGGTCGA 76197 Query 30125 CCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACT 30184 | ||| | || | |||||| | | | ||| || ||||| || || || | ||| | Sbjct 76196 CTCCCTTGCCGGCGTAGTCGGTCTTGGCGTCGACATATTCTGCGCCAAAGTGGCGCCATT 76137 Query 30185 GGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCA 30244 |||| |||||||| || |||||||| || | || | |||| || |||| |||| | Sbjct 76136 GGAAGCCGTACACGGGACCCAGGTCGCCTACCTCGCGGTGCGTGAGGCCCAGGCTGTCGA 76077 Query 30245 AAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC 30284 || || | || |||||| | ||||| ||||| || || Sbjct 76076 GGAACTCGCGCGATCCGTTGCCATCCCATATCTTGACGCC 76037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408604502528990