Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq5 316 4e-81
seq96 136 7e-27
>seq5
Length=693879
Score = 316 bits (350), Expect = 4e-81
Identities = 1207/1872 (64%), Gaps = 66/1872 (4%)
Strand=Plus/Plus
Query 212552 CACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTT 212611
||| || ||||| | || | |||||||| | ||||| | ||||||||||| |||||
Sbjct 202320 CACGGTGAACTGGATAGGTGCGGCAGCAGCTTGCGTGCGCAAGTAGTACATGCCCGTCTT 202379
Query 212612 TAGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTG 212671
|||||| ||||||| | |||||| | |||| |||| | || | |
Sbjct 202380 GAGGCCCAGTTTCCAGCCGGTAAAGTGCATGGAAGTGA---TCTTGCCCATAGTG----G 202432
Query 212672 GTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCT 212731
| ||||| || || | ||| || ||||| |||||| ||||| | | |
Sbjct 202433 G--ATCCTT------CATGTGAATGTTAAGAGACTGGGACTGGTCGATGAAAGCACCACG 202484
Query 212732 GTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTC 212791
|||||| ||||| | | || | || || || | ||||| || || ||| ||| |
Sbjct 202485 GTCAGCAGCCATCTGCACGACGTGTCGTTGAGAAATTTCCCAAACAGTTTTGTAGAGAGC 202544
Query 212792 TTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGGTCAG 212848
||||| ||| | |||| | |||||| ||||| | || || | | ||| | |
Sbjct 202545 TTTGATGTCGGCCGGGATGTTGGGGATATTCTGAATGGAACCGTTCTCGGCAATGATACG 202604
Query 212849 CTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGG 212908
| | ||| | || ||| |||||| || | || || | ||| ||
Sbjct 202605 GTTCTT---CATAGCATCAGACCAAAGGCCCATGTCGACGAGATCTTTCAGCAGCCAGGG 202661
Query 212909 GTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGG 212968
|||||| | |||||| ||||||| || || | | ||||||| ||| || ||||| ||
Sbjct 202662 GTTGACAACCTGGAATTCACCTGCCAGGACACGGCGTTGGTAAATGTTGGACGTGTAAGG 202721
Query 212969 CTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCAC 213028
||||| || ||| ||||| || |||||||| | || || || |||||||| || |
Sbjct 202722 CTCGAAGCACTCATTGTTACCTAGAATCTGAGAGGTAGAAGCCGTAGGCATGGGGGCGAG 202781
Query 213029 CAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCA 213088
||| || ||| | | ||| ||||| ||| | | || || | | | |||
Sbjct 202782 CAGCAGTGAGTTGCGAATTCCATGCTCCTTGATCTG-CTCCT----TCAGACTATTCCAC 202836
Query 213089 TCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCT 213148
|| ||||| |||| |||||||| ||||||||||||||| | ||||| | |
Sbjct 202837 TC--CCAGA--GGTCAGAAGGCTTCACGTCCCACATGTCAAACTGAAGAATGCCCTCGGA 202892
Query 213149 CACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGC 213208
|||| ||||| | | ||||| || || ||||||||||||| ||| || ||
Sbjct 202893 GGCGGGAGAGCCCTCAAAGGTAGAGTAAGGTCCTTGCTCCTTGGCCAATTCGACAGAGGC 202952
Query 213209 CTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGG 213268
|||||||| | ||||||||| |||||||||| | ||||||||| |||||| ||
Sbjct 202953 AGTGAGGGCAGCATGGTAGATGGTCTCAAATATCTGCTTGTTGAGCTCACGGGCCTCAGG 203012
Query 213269 GGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCC 213328
|||| || ||||| || | |||| | || || || |||||||| || | ||
Sbjct 203013 GGACTCAAATGGCATGCGCAAGGCAAGGAAAGCGTCGGCGAGACCCTGGACGCCAACACC 203072
Query 213329 GATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTC 213388
|| || | ||||| || ||| || | ||||| | |||||| |||| ||
Sbjct 203073 AATCGGCCGGTGTCGCATGTTGCTGTTCCGGGCCTCCTGGACGGGGTAGTGGTTGACATC 203132
Query 213389 GATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATT 213448
||||| |||| |||||||| | || | |||||| | | || | | |
Sbjct 203133 AATGATTCTGTTCAGGTTGCGAACAACGACCTGGGTGACCTCGTGGAGCTTC------TG 203186
Query 213449 GAACACGTAGC--CCC----CGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTT 213502
||| |||||| ||| || | || || ||||||| || | ||||| |||
Sbjct 203187 GAAGTCGTAGCGTCCCTCGTTGTAGTCTACGAAGGCAGGCAGAGCCAGAGAGGCCAAGTT 203246
Query 213503 GCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCA 213562
|||||| || ||||| | || | | | |||||| | || || ||||| |||||| ||
Sbjct 203247 GCAAACAGCGACCTCATCAGGGGCAGAGTACTCGACAATTTCCGTGCAAAGGTTGGAGCT 203306
Query 213563 TCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCAT 213622
||||| || |||| ||||| ||||| ||| |||| | |||||||||||||||
Sbjct 203307 GCGGATTGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTAGAGCAT 203366
Query 213623 GTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTT 213682
| | || || |||||| ||||| | |||| || | |||||| | |||| |
Sbjct 203367 GAAAGGATTACCCGTCTCTGTCTGGGCCTCCAGGATGGAGTACCAGAGCT-TCTGGGCAC 203425
Query 213683 GACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTC 213742
|| ||| ||| | | | | ||| |||| ||| ||||| | | || ||
Sbjct 203426 GAATGGTCGCACGAC--CCTTGCCCTCACGCTCATACTTTTCATAGAGAGCCTCAAACTC 203483
Query 213743 GTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCC 213801
| ||| || | | | |||| || || || ||| ||||| || |||| || |
Sbjct 203484 CTCGCCGTAGCAGTCAG-CCAGGCCGGGGCATTCGTTGGGGCACATCAGAGTCCAATCAC 203542
Query 213802 CG-TCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCC 213860
|| || |||| ||| | || |||||| || || || | ||| || || ||| | ||
Sbjct 203543 CGTTCTTCTC-GACGCGCTTCATGAAAAGATCGGGAATCCAAAGAGCAAGGAATAAATCA 203601
Query 213861 CTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCC 213920
| | | || ||| || || || |||| ||| || || ||||| | ||
Sbjct 203602 CGAGCACGGACTTCTTCCTTGCCGTGATTCTTTCGCAAATCAAGGAACTCAAACACATCG 203661
Query 213921 GCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCC 213977
|||||||| ||||||| ||| |||||||| ||||| | || | ||||| ||||||||
Sbjct 203662 GCGTGCCAAGGCTCCAAGTAAATGGCAAAAGCGCCAGGTCGCTTGTTGCCACCCTGGTCG 203721
Query 213978 ACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCG 214037
|| |||||| ||||||| | || || | ||| | | || |||||| |||
Sbjct 203722 ACATATCTGGCCGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTGGACGTCCCG 203781
Query 214038 TTGGTTCCCGCTATATACGAGCCGGAGGCCCTCA--GGTTGCTCATGGAGAGCCCTATGC 214095
||||| || || || || ||||| | ||| | | | || ||| | || || || |
Sbjct 203782 TTGGTGCCGGCAATGTAGGAGCCAGTGGCGCGAATGCGGTGGACATTCA-AG-CCGATAC 203839
Query 214096 CACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGC 214155
|||| || ||||||||||||||||||| | | | || || |||||| | ||||
Sbjct 203840 CACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTCGATGC 203899
Query 214156 TGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGA--CGAGCCAGA 214213
|||| || | | || | | |||||| ||| |||| | | | || | |||||
Sbjct 203900 TGTCCTCCTTCATGTCGACGAGGAAGCAAGACGACAGCT--GACATTGAGGTGTGCCAGC 203957
Query 214214 GTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTC 214273
|||||| || ||||| ||| || | | | ||| | || | ||| |||||| ||
Sbjct 203958 GTTGAATAGTGTGGGTGAGGCGTGTGTGAAGAGTTTGCTGGACATGAGATGGTAGGTTTC 204017
Query 214274 CAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGCTG 214333
||||||| || | || |||| | |||| | ||| | |||||||||
Sbjct 204018 CAGGACTCGCTCAATATTGTCTCCCCAGATCCCGACAGCGACACGCATAATCATGTGCTG 204077
Query 214334 GGGCCTCT---CTATGGGTCCTTTGGGGCCCTTGAGCAGGTAGGAGCGCTCCAGAGTCTT 214390
||| | || | || || ||| | |||||| || || || ||||||| ||||||
Sbjct 204078 GGGTCGCTCGACAATCTTGCCGTTGAG---CTTGAGAAGATATGACCGCTCCAAAGTCTT 204134
Query 214391 GAACCCAAAGTA 214402
||| ||||||||
Sbjct 204135 GAAGCCAAAGTA 204146
>seq96
Length=87723
Score = 136 bits (150), Expect = 7e-27
Identities = 301/443 (68%), Gaps = 19/443 (4%)
Strand=Plus/Plus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
|||||| || ||||||| ||||| |||||||||||||| || |||| |||||||||||
Sbjct 51981 CTGGTACTCACCCACTCGTTTCTCGAAGAAGTTTGTCTTGCCACCCAATGAGATGTTCTC 52040
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTG-TTCCAGCA 47957
||||||| || || || | || || |||| || | ||| ||| | | ||||
Sbjct 52041 CATGAAGTCAAAAGGATTAGCCGTCTTGTACA-CCTTCTCATTACCAAGAGCAACAAGCA 52099
Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG-G 48016
|| |||| || || |||| ||||| | | ||| | ||| |||||||| | || |
Sbjct 52100 GGCGATCGGCTACAAACTCAATGTACTGTTTCATCAATGTGGCATTCATGCCAAGTAGAG 52159
Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076
||| |||||||||| || |||||||| ||||| || || || || | ||||
Sbjct 52160 CACA-TGGCAAAGCCTCAGTCAGAAACTCTTTCTCGATGGTGACAGCATCTGTAATAATC 52218
Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTT---GGCATAG---AGCATG 48130
|| | ||| || | || | || | ||||||| | | || |||| |
Sbjct 52219 TGTT-------GGA-TCATCTGCTTGCTGGCTC-GGTGCTTCAAGTGAGAGTGCAGCAAG 52269
Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190
||||||||||| |||||| || || || || ||| | ||||||||||| ||||
Sbjct 52270 CAGGCAAAGTCTGTGTGCAGACCCTCATCACGCGAGATTAATTCGTTGGAGAAGGTGAGA 52329
Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250
|| ||||| | || | || || |||||||| || | || |||| || ||||||
Sbjct 52330 CCGGGCATCAAGCCACGCTTCTTCAGCCAGAAGATAGAAGCAAAAGCACCGCTGAAGAAA 52389
Query 48251 ATGCCCTCCACTGCCGCGAACGC 48273
|| || ||||| || || || ||
Sbjct 52390 ATACCTTCCACGGCAGCAAAAGC 52412
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931502175859200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |