Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq5 284 2e-71 seq96 114 2e-20 >seq5 Length=693879 Score = 284 bits (314), Expect = 2e-71 Identities = 841/1280 (66%), Gaps = 45/1280 (4%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGG-CCTCGGG 221475 || |||||||| ||||||||||||||||| ||| ||||||||| ||| || |||| || Sbjct 202954 GTGAGGGCAGCATGGTAGATGGTCTCAAATATCTGCTTGTTGAG-CTCACGGGCCTCAGG 203012 Query 221476 AGAAGTGAAGGGCATACGCA--GCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATA 221533 || || ||||| |||| ||| ||||| ||||||| || ||||| || || | | Sbjct 203013 GGACTCAAATGGCATGCGCAAGGCAAG-GAAAG-CGTCGGCGAGACCCTGGACGCCAACA 203070 Query 221534 CCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGA 221591 || || |||| ||||| | ||||| | ||| | || |||| ||||| || ||||| Sbjct 203071 CCAATCGGCCGGTGTCGCATGTTGCTGTTCCGGGC-CTCCTGG-ACGGGGTAGTGGTTGA 203128 Query 221592 CGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGT 221651 | || || | |||| ||||| || | ||| | |||||| ||||||||| Sbjct 203129 CATCAATGATTCTGTTCAGGTTGCGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGA 203188 Query 221652 GATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC 221711 | | | || || |||| | | || || || || || || | Sbjct 203189 AGTCGTA---------GCGTCCCTCGTTGTAG---TCTACGAAGGCAGGCAGAGCCAGAG 203236 Query 221712 TGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGA 221771 ||||| ||| || || || ||||| || | | |||| | || || || || | Sbjct 203237 AGGCCAAGTTGCAAACAGCGACCTCATCAGGGGCAGAGTACTCGACAATTTCCGTGCAAA 203296 Query 221772 GGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCT 221831 ||||| || ||| || |||| || || || || ||| | ||| || |||| Sbjct 203297 GGTTGGAGCTGCGGATTGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCT 203356 Query 221832 TGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTT 221891 |||||||||| || ||| || ||||| ||| ||| |||| || || |||||| | Sbjct 203357 TGTAGAGCATGAAAGGATTACCCGTCTCTGTCTGGGCCTCCAGGATGGAGTACCAGAGCT 203416 Query 221892 CTCTGG-CGCTCACCGTC------CTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTA 221944 ||||| | | | ||| | |||| | ||| ||| ||||||||| Sbjct 203417 -TCTGGGCACGAATGGTCGCACGACCCTTGCCCTCACGCTCATACTTTTCATAG------ 203469 Query 221945 TAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACAC 222004 ||||| | |||||| || ||||| || ||||||| || || | ||| ||| Sbjct 203470 -AGAGCCT--CAAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCATTCGTTGGGGCAC 203526 Query 222005 ATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGC 222064 |||||| |||| | ||| | | ||| | || |||||| || || || ||||| || Sbjct 203527 ATCAGAGTCCAATCACCGTTCTTCTCGACGCGCTTCATGAAAAGATCGGGAATCCAAAGA 203586 Query 222065 GCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAA 222124 || | || | ||| | | || || ||| ||||| || || | || ||| | Sbjct 203587 GCAAGGAATAAATCACGAGCACGGACTTCTTCCTTGCCGTGATTCTTTCGCAAATCAAGG 203646 Query 222125 AACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTG 222184 |||||||| | || |||||||| ||||||| || | ||| | |||||| ||||||||| Sbjct 203647 AACTCAAACACATCGGCGTGCCAAGGCTCCAAGTAAATGGCAAAAGCGCCAGGTCGCTTG 203706 Query 222185 TTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGT 222244 ||||||||||| || || || || |||||| | ||||| | || | | Sbjct 203707 TTGCCACCCTGGTCGACATATCTGGCCGTGTTGTTGAAAACACGAAGCATGGGAATGACA 203766 Query 222245 CCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCA 222304 || ||||| ||||||||||| |||||| | || ||| | | | | || Sbjct 203767 CCATTGGACGTCCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCGCGAATGCGGTGGACA 203826 Query 222305 GACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATG 222364 || |||||||||||| || || ||||||||||||||| ||||||| ||||| | Sbjct 203827 TTCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAG 203886 Query 222365 ATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATT-T 222423 |||||||| || ||||||||| | || | || || |||||||||| |||| ||| Sbjct 203887 ATGCCCTCGATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGACGACAGCTGACATTGA 203946 Query 222424 GGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAG 222483 |||| || ||||| || || ||||| ||||||||| ||| || ||||| || Sbjct 203947 GGTGTGCCA-GCGTTGAATAGTGTGGGTGAGGCGTGTGTGAAGAGTTTGCTGGACATGAG 204005 Query 222484 ATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCAT 222543 || ||| || || | ||||| | || ||||| || ||| | ||| | ||| Sbjct 204006 ATGGTAGGTTTCCAGGACTCGCTCAATATTGTCTCCCCAGATCCCGACAGCGACACGCAT 204065 Query 222544 GTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACGATTTT 222601 ||||| |||||| | ||| ||| || | ||||| |||| || || || Sbjct 204066 AATCATGTGCTGGGGTCGCTCGACAATCTTGCCGTTGAGCTTGAGA--AGATATGACCGC 204123 Query 222602 TCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCG 222661 |||| ||||||||| |||||||| | || || |||||| | | || | ||||| | Sbjct 204124 TCCAAAGTCTTGAAGCCAAAGTACTGATAGTTGAAATCTCTGTCATAGACAATGGCGGAG 204183 Query 222662 TCCAGCTCCGACTTGTGCTT 222681 || |||||| | ||||||| Sbjct 204184 TCGAGCTCCTCCCTGTGCTT 204203 >seq96 Length=87723 Score = 114 bits (126), Expect = 2e-20 Identities = 294/448 (66%), Gaps = 9/448 (2%) Strand=Plus/Minus Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936 |||| |||| || |||||||| ||||| || || || ||||||||| | ||||| | | Sbjct 52423 AGCGCTTGGTTGCTTTTGCTGCCGTGGAAGGTATTTTCTTCAGCGGTGCTTTTGCTTCTA 52364 Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996 |||||||||| ||| || || |||||||| || ||| |||||||| | ||| Sbjct 52363 TCTTCTGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAATTAATCT 52304 Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCC 26056 | || |||||||| |||| ||| ||||||||| |||| || | |||||| | Sbjct 52303 CGCGTGATGAGGGTCTGCACACAGACTTTGCCTGCTTGCTGCACTC---TCACTTGAAGC 52247 Query 26057 ACAAACCTTCTCAAG-AGACCGT-CTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAA 26114 || | | |||| ||| | | |||| || || | ||| ||||| |||||||| Sbjct 52246 ACCGAGC-CAGCAAGCAGATGATCCAACAG-ATTATTACAGATGCTGTCACCATCGAGAA 52189 Query 26115 GGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAG 26174 ||||||| | |||||||| || | | |||| Sbjct 52188 AGAGTTTCTGACTGAGGCTTTGCCATGTGCTCTACTTGGCATGAATGCCACATTGATGAA 52129 Query 26175 CCAATACATTGAGTATGTGGCCGACCATCTGC-TGTGCCAGCTGGGACTCGCCAGACTCT 26233 || |||||||||| ||| ||||| | |||| ||| | ||| | | | | | | Sbjct 52128 ACAGTACATTGAGTTTGTAGCCGATCGCCTGCTTGTTGCTCTTGGTAAT-GAGAAGGTGT 52070 Query 26234 ACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACT 26293 ||| ||| |||| || || ||||| ||||| ||||| || |||| || ||||| |||| Sbjct 52069 ACAAGACGGCTAATCCTTTTGACTTCATGGAGAACATCTCATTGGGTGGCAAGACAAACT 52010 Query 26294 TCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||| || || | || || || || || Sbjct 52009 TCTTCGAGAAACGAGTGGGTGAGTACCA 51982 Score = 93.3 bits (102), Expect = 8e-14 Identities = 181/264 (69%), Gaps = 5/264 (2%) Strand=Plus/Minus Query 25471 AAAGATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATT 25530 ||| | || ||| | |||||||| ||||| | || |||||| ||||||||||| Sbjct 52889 AAATAGATCTGGCAAATGTACAAAAAGGCCGAGGCTTCTTTCTGGACGGCCGAAGAGATC 52830 Query 25531 GATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTC 25590 |||||| | || || || ||| |||| || || || ||||| || | | | || Sbjct 52829 GATCTGTCGAAAGATTTGCACGACTGGAACAATCGTCTGAATGACGATGAGAAATATTTC 52770 Query 25591 AAGT---ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGC 25647 | | || | ||||||||||||| |||||||| || || || |||||||| || Sbjct 52769 ATCTCCCACATTCTGGCATTCTTTGCTGCCTCTGACGGCATTGTCAACGAGAACTTGGTT 52710 Query 25648 GAGAGATTCACCAGGGAAGTGC-AGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 ||| | |||| | | ||||| | ||| | | ||||| || || ||||| |||||||| Sbjct 52709 GAGCGCTTCAGCGGCGAAGTCCAAGTCCCT-GAGGCTCGTTGCTTTTACGGATTCCAGAT 52651 Query 25707 GGCCATCGAAAATGTGCACTCTGA 25730 || || ||| | ||||| || Sbjct 52650 CATGATGGAGAATATCCACTCGGA 52627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928814264227200