Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq5 284 2e-71
seq96 114 2e-20
>seq5
Length=693879
Score = 284 bits (314), Expect = 2e-71
Identities = 841/1280 (66%), Gaps = 45/1280 (4%)
Strand=Plus/Plus
Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGG-CCTCGGG 221475
|| |||||||| ||||||||||||||||| ||| ||||||||| ||| || |||| ||
Sbjct 202954 GTGAGGGCAGCATGGTAGATGGTCTCAAATATCTGCTTGTTGAG-CTCACGGGCCTCAGG 203012
Query 221476 AGAAGTGAAGGGCATACGCA--GCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATA 221533
|| || ||||| |||| ||| ||||| ||||||| || ||||| || || | |
Sbjct 203013 GGACTCAAATGGCATGCGCAAGGCAAG-GAAAG-CGTCGGCGAGACCCTGGACGCCAACA 203070
Query 221534 CCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGA 221591
|| || |||| ||||| | ||||| | ||| | || |||| ||||| || |||||
Sbjct 203071 CCAATCGGCCGGTGTCGCATGTTGCTGTTCCGGGC-CTCCTGG-ACGGGGTAGTGGTTGA 203128
Query 221592 CGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGT 221651
| || || | |||| ||||| || | ||| | |||||| |||||||||
Sbjct 203129 CATCAATGATTCTGTTCAGGTTGCGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGA 203188
Query 221652 GATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC 221711
| | | || || |||| | | || || || || || || |
Sbjct 203189 AGTCGTA---------GCGTCCCTCGTTGTAG---TCTACGAAGGCAGGCAGAGCCAGAG 203236
Query 221712 TGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGA 221771
||||| ||| || || || ||||| || | | |||| | || || || || |
Sbjct 203237 AGGCCAAGTTGCAAACAGCGACCTCATCAGGGGCAGAGTACTCGACAATTTCCGTGCAAA 203296
Query 221772 GGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCT 221831
||||| || ||| || |||| || || || || ||| | ||| || ||||
Sbjct 203297 GGTTGGAGCTGCGGATTGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCT 203356
Query 221832 TGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTT 221891
|||||||||| || ||| || ||||| ||| ||| |||| || || |||||| |
Sbjct 203357 TGTAGAGCATGAAAGGATTACCCGTCTCTGTCTGGGCCTCCAGGATGGAGTACCAGAGCT 203416
Query 221892 CTCTGG-CGCTCACCGTC------CTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTA 221944
||||| | | | ||| | |||| | ||| ||| |||||||||
Sbjct 203417 -TCTGGGCACGAATGGTCGCACGACCCTTGCCCTCACGCTCATACTTTTCATAG------ 203469
Query 221945 TAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACAC 222004
||||| | |||||| || ||||| || ||||||| || || | ||| |||
Sbjct 203470 -AGAGCCT--CAAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCATTCGTTGGGGCAC 203526
Query 222005 ATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGC 222064
|||||| |||| | ||| | | ||| | || |||||| || || || ||||| ||
Sbjct 203527 ATCAGAGTCCAATCACCGTTCTTCTCGACGCGCTTCATGAAAAGATCGGGAATCCAAAGA 203586
Query 222065 GCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAA 222124
|| | || | ||| | | || || ||| ||||| || || | || ||| |
Sbjct 203587 GCAAGGAATAAATCACGAGCACGGACTTCTTCCTTGCCGTGATTCTTTCGCAAATCAAGG 203646
Query 222125 AACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTG 222184
|||||||| | || |||||||| ||||||| || | ||| | |||||| |||||||||
Sbjct 203647 AACTCAAACACATCGGCGTGCCAAGGCTCCAAGTAAATGGCAAAAGCGCCAGGTCGCTTG 203706
Query 222185 TTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGT 222244
||||||||||| || || || || |||||| | ||||| | || | |
Sbjct 203707 TTGCCACCCTGGTCGACATATCTGGCCGTGTTGTTGAAAACACGAAGCATGGGAATGACA 203766
Query 222245 CCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCA 222304
|| ||||| ||||||||||| |||||| | || ||| | | | | ||
Sbjct 203767 CCATTGGACGTCCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCGCGAATGCGGTGGACA 203826
Query 222305 GACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATG 222364
|| |||||||||||| || || ||||||||||||||| ||||||| ||||| |
Sbjct 203827 TTCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAG 203886
Query 222365 ATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATT-T 222423
|||||||| || ||||||||| | || | || || |||||||||| |||| |||
Sbjct 203887 ATGCCCTCGATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGACGACAGCTGACATTGA 203946
Query 222424 GGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAG 222483
|||| || ||||| || || ||||| ||||||||| ||| || ||||| ||
Sbjct 203947 GGTGTGCCA-GCGTTGAATAGTGTGGGTGAGGCGTGTGTGAAGAGTTTGCTGGACATGAG 204005
Query 222484 ATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCAT 222543
|| ||| || || | ||||| | || ||||| || ||| | ||| | |||
Sbjct 204006 ATGGTAGGTTTCCAGGACTCGCTCAATATTGTCTCCCCAGATCCCGACAGCGACACGCAT 204065
Query 222544 GTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACGATTTT 222601
||||| |||||| | ||| ||| || | ||||| |||| || || ||
Sbjct 204066 AATCATGTGCTGGGGTCGCTCGACAATCTTGCCGTTGAGCTTGAGA--AGATATGACCGC 204123
Query 222602 TCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCG 222661
|||| ||||||||| |||||||| | || || |||||| | | || | ||||| |
Sbjct 204124 TCCAAAGTCTTGAAGCCAAAGTACTGATAGTTGAAATCTCTGTCATAGACAATGGCGGAG 204183
Query 222662 TCCAGCTCCGACTTGTGCTT 222681
|| |||||| | |||||||
Sbjct 204184 TCGAGCTCCTCCCTGTGCTT 204203
>seq96
Length=87723
Score = 114 bits (126), Expect = 2e-20
Identities = 294/448 (66%), Gaps = 9/448 (2%)
Strand=Plus/Minus
Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936
|||| |||| || |||||||| ||||| || || || ||||||||| | ||||| | |
Sbjct 52423 AGCGCTTGGTTGCTTTTGCTGCCGTGGAAGGTATTTTCTTCAGCGGTGCTTTTGCTTCTA 52364
Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996
|||||||||| ||| || || |||||||| || ||| |||||||| | |||
Sbjct 52363 TCTTCTGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAATTAATCT 52304
Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCC 26056
| || |||||||| |||| ||| ||||||||| |||| || | |||||| |
Sbjct 52303 CGCGTGATGAGGGTCTGCACACAGACTTTGCCTGCTTGCTGCACTC---TCACTTGAAGC 52247
Query 26057 ACAAACCTTCTCAAG-AGACCGT-CTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAA 26114
|| | | |||| ||| | | |||| || || | ||| ||||| ||||||||
Sbjct 52246 ACCGAGC-CAGCAAGCAGATGATCCAACAG-ATTATTACAGATGCTGTCACCATCGAGAA 52189
Query 26115 GGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAG 26174
||||||| | |||||||| || | | ||||
Sbjct 52188 AGAGTTTCTGACTGAGGCTTTGCCATGTGCTCTACTTGGCATGAATGCCACATTGATGAA 52129
Query 26175 CCAATACATTGAGTATGTGGCCGACCATCTGC-TGTGCCAGCTGGGACTCGCCAGACTCT 26233
|| |||||||||| ||| ||||| | |||| ||| | ||| | | | | | |
Sbjct 52128 ACAGTACATTGAGTTTGTAGCCGATCGCCTGCTTGTTGCTCTTGGTAAT-GAGAAGGTGT 52070
Query 26234 ACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACT 26293
||| ||| |||| || || ||||| ||||| ||||| || |||| || ||||| ||||
Sbjct 52069 ACAAGACGGCTAATCCTTTTGACTTCATGGAGAACATCTCATTGGGTGGCAAGACAAACT 52010
Query 26294 TCTTTGAAAAGAGGGTCGGCGACTATCA 26321
|||| || || | || || || || ||
Sbjct 52009 TCTTCGAGAAACGAGTGGGTGAGTACCA 51982
Score = 93.3 bits (102), Expect = 8e-14
Identities = 181/264 (69%), Gaps = 5/264 (2%)
Strand=Plus/Minus
Query 25471 AAAGATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATT 25530
||| | || ||| | |||||||| ||||| | || |||||| |||||||||||
Sbjct 52889 AAATAGATCTGGCAAATGTACAAAAAGGCCGAGGCTTCTTTCTGGACGGCCGAAGAGATC 52830
Query 25531 GATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTC 25590
|||||| | || || || ||| |||| || || || ||||| || | | | ||
Sbjct 52829 GATCTGTCGAAAGATTTGCACGACTGGAACAATCGTCTGAATGACGATGAGAAATATTTC 52770
Query 25591 AAGT---ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGC 25647
| | || | ||||||||||||| |||||||| || || || |||||||| ||
Sbjct 52769 ATCTCCCACATTCTGGCATTCTTTGCTGCCTCTGACGGCATTGTCAACGAGAACTTGGTT 52710
Query 25648 GAGAGATTCACCAGGGAAGTGC-AGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706
||| | |||| | | ||||| | ||| | | ||||| || || ||||| ||||||||
Sbjct 52709 GAGCGCTTCAGCGGCGAAGTCCAAGTCCCT-GAGGCTCGTTGCTTTTACGGATTCCAGAT 52651
Query 25707 GGCCATCGAAAATGTGCACTCTGA 25730
|| || ||| | ||||| ||
Sbjct 52650 CATGATGGAGAATATCCACTCGGA 52627
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928814264227200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |