Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq20 127 1e-23 seq11 98.7 6e-15 >seq20 Length=366416 Score = 127 bits (140), Expect = 1e-23 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||| |||||||||||||| || || | |||||||| || || || Sbjct 156382 ACGGAGGCGGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTATAATCGGCGAGCGT 156441 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||||| | || || ||||| ||||| ||||| || || ||||||||||| || Sbjct 156442 ACGGCCGTCTTCCAACTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCC 156501 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||||||||||||| ||||||| || |||||||||| | || || Sbjct 156502 TTCCTTGTCTTGAATCTTTGATTTGACATTGTCGATAGTATCAGAAGATTCCACCTCGAG 156561 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAAC 480760 |||||| || || ||||| | |||||| || Sbjct 156562 GGTAATGGTCTTTCCGGTCAAAGTCTTGAC 156591 Score = 120 bits (132), Expect = 2e-21 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||| |||||||| || || ||| || | || || || || || || Sbjct 156672 ACGGAGGCGGAGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCTGCGAGGGT 156731 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | || ||||| ||||||||||||||||| ||||| ||||| |||||||||||||| Sbjct 156732 GCGGCCGTCCTCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGTCAGGAGGAATTCC 156791 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| |||||||| |||||| || || || |||| || | | |||| Sbjct 156792 CTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCAGATGACTCGA-CCTCAA 156850 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || ||||| || || || |||||||| || Sbjct 156851 GAGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATCTG 156890 >seq11 Length=468793 Score = 98.7 bits (108), Expect = 6e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 474734 GATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGAT 474793 ||||| ||| | |||||||||||||| ||||| || || || |||||||| || || || Sbjct 68512 GATGCTGTAGTCACTGTTCCAGCATACTTTAACGACTCGCAGCGTCAAGCGACCAAGGAC 68453 Query 474794 GCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCA 474853 || || | ||||| || | || | || ||||| |||||||| || || || || || Sbjct 68452 GCTGGTACCATTGCCGGAATCAACATCTTGCGTATCATTAATGAGCCCACTGCTGCAGCT 68393 Query 474854 CTTGCTTATGGTCTTGATAAGAATTCTGA 474882 |||| || || ||||| ||||| |||| Sbjct 68392 ATTGCGTACGGCCTTGACAAGAAGGCTGA 68364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268066386539240