Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq5 315 8e-81
seq96 87.8 2e-12
seq9 86.0 7e-12
>seq5
Length=693879
Score = 315 bits (348), Expect = 8e-81
Identities = 1128/1738 (65%), Gaps = 43/1738 (2%)
Strand=Plus/Minus
Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271
|| ||| ||||| | ||||| ||||| |||| ||| || || | ||||| |||
Sbjct 204080 CCCCAGCACATGATTATGCGTGTCGCTGTCGGGATCTGGGGAGACAATATTGAGCGAGTC 204021
Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACCAACCCTCT 75329
|||| || ||| | |||||| || | | |||| ||||| |||| || || |
Sbjct 204020 CTGGAAACCTACCATCTCATGTCC--AGCAAACTCTTCACACACGCCTCACCCACACTAT 203963
Query 75330 TCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389
|||| ||||| ||||| | ||| |||| ||||||||| ||| || |||||||
Sbjct 203962 TCAACGCTGGCACACCTCAATGTCAGCTGTCGTCTTGCTTCCTCGTCGACATGAAGGAGG 203903
Query 75390 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 75449
|| ||| | || ||||||| || || | | || || ||||| ||| |||||
Sbjct 203902 ACAGCATCGAGGGCATCTATGACACGCTCAAGACCTGCGCCATGATCTCCAAGATGGCTG 203843
Query 75450 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 75509
| ||||| || || | |||| | | |||| | || ||| || || |
Sbjct 203842 GTGGTATCGGCTTGAATGTCCACCGCATTCGCGCCACTGGCTCCTACATTGCCGGCACCA 203783
Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569
| || || ||||| | ||||| |||||||| || || ||| ||| || | ||||
Sbjct 203782 ACGGGACGTCCAATGGTGTCATTCCCATGCTTCGTGTTTTCAACAACACGGCCAGATATG 203723
Query 75570 TAAATCAAGCGGGGCGTC--GCAAG--GGGTCCATCGCGGTCTACTTGGAACCATGGCAT 75625
| | || | | ||| | || | || | | || | |||||||| || |||||
Sbjct 203722 TCGACCAGG-GTGGCAACAAGCGACCTGGCGCTTTTGCCATTTACTTGGAGCCTTGGCAC 203664
Query 75626 GCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG- 75684
|||||| | | ||||||||||| || ||| || || || | ||||| | || |||
Sbjct 203663 GCCGATGTGTTTGAGTTCCTTGATTTGCGAAAGAATCACGGCAAGGAAGAAG-TCCGTGC 203605
Query 75685 TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGG 75744
| | ||| | || | || |||||||| || |||||||||||||| || ||| ||
Sbjct 203604 TCGTGATTTATTCCTTGCTCTTTGGATTCCCGATCTTTTCATGAAGCGCGTCGAGAAGAA 203545
Query 75745 TGGTCAATGGTCTCTTTTCTGTCCAGAC-AAGGCACCAGGTCTCTCCGACGCGGTGGGTG 75803
||| | ||| |||| | || || || || || || || || | ||| || |
Sbjct 203544 CGGTGATTGGACTCTGATGTGCCCCAACGAATGCCCC-GGCCTGGCTGACTGCTACGGCG 203486
Query 75804 AGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTAC 75863
|||||||||| || ||||| ||||||||| ||||| | | |||||| | |
Sbjct 203485 AGGAGTTTGAGGCTCTCTATGAAAAGTATGAGCGTGAGGGCAAGGGTCGTGCGACCATTC 203426
Query 75864 CAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATAT 75922
||| | || | | ||| | | || || | | ||||| ||||| || | || |
Sbjct 203425 GTGCC-CAGAAGCTCTGGTACTCCATCCTGGAGGCCCAGACAGAGACGGGTAATCCTTTC 203367
Query 75923 ATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAG 75982
||||| ||||||||||| || |||| |||||| ||||| ||||| ||||||||||||
Sbjct 203366 ATGCTCTACAAGGATGCCTGCAACAGGAAGAGCAACCAGAAGAACTTGGGAACAATCCGC 203307
Query 75983 AGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGC 76042
||||| || ||||||||||||||| | |||||| | | |||||| |||||||||
Sbjct 203306 AGCTCCAACCTTTGCACGGAAATTGTCGAGTACTCTGCCCCTGATGAGGTCGCTGTTTGC 203247
Query 76043 AATTTGGCATCAATCGC----CCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGA 76098
|| ||||| || | || ||| || ||| | | | | ||| ||| | ||
Sbjct 203246 AACTTGGCCTCTCTGGCTCTGCCTGCCTTCGTA-GACTACAACGAGGGACGC---TACGA 203191
Query 76099 TTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGA 76158
| | || || || || |||| || | ||| || || ||| || |||||||
Sbjct 203190 CTTCCAGAAGCTCCACGAGGTCACCCAGGTCGTTGTTCGCAACCTGAACAGAATCATTGA 203131
Query 76159 CAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGG 76218
|| || ||||| || || || || || ||||||||| | || |||||
Sbjct 203130 TGTCAACCACTACCCCGTCCAGGAGGCCCGGAACAGCAACATGCGACACCGGCCGATTGG 203071
Query 76219 TTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGA 76278
| | || || || |||||||| || | || || | ||| ||||||| ||
Sbjct 203070 TGTTGGCGTCCAGGGTCTCGCCGACGCTTTCCTTGCCTTGCGCATGCCATTTGAGTCCCC 203011
Query 76279 TGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGC 76338
||| ||| ||| | || | || ||||| ||||| || || || |||| ||
Sbjct 203010 TGAGGCCCGTGAGCTCAACAAGCAGATATTTGAGACCATCTACCATGCTGCCCTCACTGC 202951
Query 76339 GAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTC 76398
| |||||||| | | ||||| | || || |||||||| |||||||| ||
Sbjct 202950 CTCTGTCGAATTGGCCAAGGAGCAAGGACCTTACTCTACCTTTGAGGGCTCTCCCGCCTC 202891
Query 76399 CCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCT--CAACTACGACTGG 76456
| | || | ||||||||||| ||||||| | ||||| || || | || || |||
Sbjct 202890 CGAGGGCATTCTTCAGTTTGACATGTGGG-ACGTGAAGCC-TTCTGACCTCTGGGAGTGG 202833
Query 76457 GATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCA 76516
|| ||| ||||| | ||||||||| | || |||| ||| || || | || ||
Sbjct 202832 AATAGTCTGAAGGAGCAGATCAAGGAGCATGGAATTCGCAACTCACTGCTGCTCGCCCCC 202773
Query 76517 ATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACA 76576
||||| || || || ||| | || || | ||||| ||||| ||||| || || |||||
Sbjct 202772 ATGCCTACGGCTTCTACCTCTCAGATTCTAGGTAACAATGAGTGCTTCGAGCCTTACACG 202713
Query 76577 ACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTC 76636
| ||||| |||| | | ||| |||||||| || |||||||| ||
Sbjct 202712 TCCAACATTTACCAACGCCGTGTCCTGGCAGGTGAATTCCAGGTTGTCAACCCCTGGCTG 202653
Query 76637 GTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGA---TCTCA-TGGT 76692
| || || ||| | || || || ||||| | | ||||||| | | ||| ||
Sbjct 202652 CTGAAAGATCTCGTCGACATGGGCCTTTGGTCTGATGCTATGAAGAACCGTATCATTGCC 202593
Query 76693 GAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCTA 76752
|| | | ||||||||||| |||||| | | ||||| | || ||||| ||||||
Sbjct 202592 GAGAAC----GGTTCCATTCAGAATATCCCCAACATCCCGGCCGACATCAAAGCTCTCTA 202537
Query 76753 CCGCACAGTGTGGGAAA--TCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGT 76810
| || || ||||||| || | | | | ||| | | ||||| || || ||||||
Sbjct 202536 CAAAACTGTTTGGGAAATTTCTCAACG--ACACGTCGTGCAGATGGCTGCTGACCGTGGT 202479
Query 76811 CGCTTCATTGATCAAAGTCAAAG--TATGAATCTATTCATGGAAAGTCCAACGATGTCCA 76868
||||| || | |||| || | | || | |||| | ||| || ||| ||
Sbjct 202478 GCTTTCATCGACC--AGTCCCAGTCTCTTAACATTCACATGAAGGATCCCACTATGGGCA 202421
Query 76869 AGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTA 76926
|| || |||| ||||| | || ||||||| ||| ||||| || || ||||||||
Sbjct 202420 AGATCACTTCCATGCACTTTACCGGCTGGAAACTGGGCCTCAAGACGGGCATGTACTA 202363
>seq96
Length=87723
Score = 87.8 bits (96), Expect = 2e-12
Identities = 148/209 (71%), Gaps = 4/209 (2%)
Strand=Plus/Minus
Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTCGCTCCTTCGCCGAGCG 65081
|||||||| | ||||| || ||| || | |||||| || | ||||||| ||||
Sbjct 52478 AAGAAGGCAGATTGGGCTATCCGTTGGATTCAGGACAAAGAATC-CAGCTTCGCCCAGCG 52420
Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCG-CTATTT 65140
| | |||| ||||| ||||| ||||| |||||| ||| | || ||| |||| |
Sbjct 52419 CTTGGTTGCTTTTGCTGCCGTGGAAGGTATTTTCTTCAGCGGTGCTTT-TGCTTCTATCT 52361
Query 65141 ATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCC 65200
||| |||||||||| || | ||||| || || |||||| || ||| | || || |
Sbjct 52360 TCTGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAATTAATCTCGC 52301
Query 65201 GAGATGAGGGTCTCCACCAGGAGTTTGCC 65229
| ||||||||||| ||| || ||||||
Sbjct 52300 GTGATGAGGGTCTGCACACAGACTTTGCC 52272
>seq9
Length=558614
Score = 86.0 bits (94), Expect = 7e-12
Identities = 294/449 (65%), Gaps = 22/449 (5%)
Strand=Plus/Minus
Query 175243 TTTCTCAAGCAACCCGAGAGATATTTTG-GAAGT--GGTGCCAAGATCCCCCGAGGCGCC 175299
|||||||| || || |||| | |||| |||| || |||||||| || || || ||
Sbjct 366435 TTTCTCAAACAGCCTGAGA---AGTTTGAGAAGCTAGGAGCCAAGATTCCTCGCGGAGCT 366379
Query 175300 CTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAA 175359
| |||||||| |||||||| || || || || | || ||||| || ||||||
Sbjct 366378 ATCCTCGCGGGACCTCCAGGTACTGGCAAAACGCTTATTGCTAAAGCCACGGCAGGTGAA 366319
Query 175360 TCAAATGTCCCATTCATCCAGTGCTCTGCCG--CAAACTTTGTGGAGATGTTTGTTGGTG 175417
|| ||| |||||| | || | | || | | | ||||| || |||||||||||||
Sbjct 366318 TCTGGTGTTCCATTCTTT-AGCG-TAAGCGGTTCCGAATTTGTAGAAATGTTTGTTGGTG 366261
Query 175418 TGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTG 175477
| ||| | | |||| || ||||| |||| | ||| | ||| ||| || ||
Sbjct 366260 TTGGTCCTTCACGGGTCCGAGATCTATTTGCCGAAGGTCGCAAGAATGCACCCTGCATCA 366201
Query 175478 TCTTCATTGATGAGATTGATGCGGTGGGCA-AG-----CAACGCAGCGCTGGTGGTATGC 175531
| ||||||||||| || ||||| | || | || ||| |||| | || |
Sbjct 366200 TTTTCATTGATGAAATCGATGCCATTGGTAGAGCTCGTCAAGAAAGCGGACGAGGCTTCG 366141
Query 175532 CAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTG 175591
| || || ||| ||||| || | ||||| | || || || |||||||| ||
Sbjct 366140 GTGGCAACGATGAGCGAGAAGCTACGCTGAATCAGATTCTGACAGAAATGGATGGATTCA 366081
Query 175592 ACA---ATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATG 175648
||| |||| | |||| || | || | ||| || || | ||||| ||||||
Sbjct 366080 ACACCCGTGAGCAAG---TTGTCGTGCTGGCCGGCACCAACCGAGCCGATATTCTTGATA 366024
Query 175649 ACGCCCTCCTTCGCCCGGGTCGTTTTGAT 175677
| || ||| | || || || |||||||||
Sbjct 366023 AGGCTCTCATGCGTCCCGGGCGTTTTGAT 365995
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596549987774400
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