Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq5 315 8e-81 seq96 87.8 2e-12 seq9 86.0 7e-12 >seq5 Length=693879 Score = 315 bits (348), Expect = 8e-81 Identities = 1128/1738 (65%), Gaps = 43/1738 (2%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| | ||||| ||||| |||| ||| || || | ||||| ||| Sbjct 204080 CCCCAGCACATGATTATGCGTGTCGCTGTCGGGATCTGGGGAGACAATATTGAGCGAGTC 204021 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACCAACCCTCT 75329 |||| || ||| | |||||| || | | |||| ||||| |||| || || | Sbjct 204020 CTGGAAACCTACCATCTCATGTCC--AGCAAACTCTTCACACACGCCTCACCCACACTAT 203963 Query 75330 TCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389 |||| ||||| ||||| | ||| |||| ||||||||| ||| || ||||||| Sbjct 203962 TCAACGCTGGCACACCTCAATGTCAGCTGTCGTCTTGCTTCCTCGTCGACATGAAGGAGG 203903 Query 75390 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 75449 || ||| | || ||||||| || || | | || || ||||| ||| ||||| Sbjct 203902 ACAGCATCGAGGGCATCTATGACACGCTCAAGACCTGCGCCATGATCTCCAAGATGGCTG 203843 Query 75450 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 75509 | ||||| || || | |||| | | |||| | || ||| || || | Sbjct 203842 GTGGTATCGGCTTGAATGTCCACCGCATTCGCGCCACTGGCTCCTACATTGCCGGCACCA 203783 Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569 | || || ||||| | ||||| |||||||| || || ||| ||| || | |||| Sbjct 203782 ACGGGACGTCCAATGGTGTCATTCCCATGCTTCGTGTTTTCAACAACACGGCCAGATATG 203723 Query 75570 TAAATCAAGCGGGGCGTC--GCAAG--GGGTCCATCGCGGTCTACTTGGAACCATGGCAT 75625 | | || | | ||| | || | || | | || | |||||||| || ||||| Sbjct 203722 TCGACCAGG-GTGGCAACAAGCGACCTGGCGCTTTTGCCATTTACTTGGAGCCTTGGCAC 203664 Query 75626 GCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG- 75684 |||||| | | ||||||||||| || ||| || || || | ||||| | || ||| Sbjct 203663 GCCGATGTGTTTGAGTTCCTTGATTTGCGAAAGAATCACGGCAAGGAAGAAG-TCCGTGC 203605 Query 75685 TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGG 75744 | | ||| | || | || |||||||| || |||||||||||||| || ||| || Sbjct 203604 TCGTGATTTATTCCTTGCTCTTTGGATTCCCGATCTTTTCATGAAGCGCGTCGAGAAGAA 203545 Query 75745 TGGTCAATGGTCTCTTTTCTGTCCAGAC-AAGGCACCAGGTCTCTCCGACGCGGTGGGTG 75803 ||| | ||| |||| | || || || || || || || || | ||| || | Sbjct 203544 CGGTGATTGGACTCTGATGTGCCCCAACGAATGCCCC-GGCCTGGCTGACTGCTACGGCG 203486 Query 75804 AGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTAC 75863 |||||||||| || ||||| ||||||||| ||||| | | |||||| | | Sbjct 203485 AGGAGTTTGAGGCTCTCTATGAAAAGTATGAGCGTGAGGGCAAGGGTCGTGCGACCATTC 203426 Query 75864 CAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATAT 75922 ||| | || | | ||| | | || || | | ||||| ||||| || | || | Sbjct 203425 GTGCC-CAGAAGCTCTGGTACTCCATCCTGGAGGCCCAGACAGAGACGGGTAATCCTTTC 203367 Query 75923 ATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAG 75982 ||||| ||||||||||| || |||| |||||| ||||| ||||| |||||||||||| Sbjct 203366 ATGCTCTACAAGGATGCCTGCAACAGGAAGAGCAACCAGAAGAACTTGGGAACAATCCGC 203307 Query 75983 AGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGC 76042 ||||| || ||||||||||||||| | |||||| | | |||||| ||||||||| Sbjct 203306 AGCTCCAACCTTTGCACGGAAATTGTCGAGTACTCTGCCCCTGATGAGGTCGCTGTTTGC 203247 Query 76043 AATTTGGCATCAATCGC----CCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGA 76098 || ||||| || | || ||| || ||| | | | | ||| ||| | || Sbjct 203246 AACTTGGCCTCTCTGGCTCTGCCTGCCTTCGTA-GACTACAACGAGGGACGC---TACGA 203191 Query 76099 TTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGA 76158 | | || || || || |||| || | ||| || || ||| || ||||||| Sbjct 203190 CTTCCAGAAGCTCCACGAGGTCACCCAGGTCGTTGTTCGCAACCTGAACAGAATCATTGA 203131 Query 76159 CAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGG 76218 || || ||||| || || || || || ||||||||| | || ||||| Sbjct 203130 TGTCAACCACTACCCCGTCCAGGAGGCCCGGAACAGCAACATGCGACACCGGCCGATTGG 203071 Query 76219 TTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGA 76278 | | || || || |||||||| || | || || | ||| ||||||| || Sbjct 203070 TGTTGGCGTCCAGGGTCTCGCCGACGCTTTCCTTGCCTTGCGCATGCCATTTGAGTCCCC 203011 Query 76279 TGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGC 76338 ||| ||| ||| | || | || ||||| ||||| || || || |||| || Sbjct 203010 TGAGGCCCGTGAGCTCAACAAGCAGATATTTGAGACCATCTACCATGCTGCCCTCACTGC 202951 Query 76339 GAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTC 76398 | |||||||| | | ||||| | || || |||||||| |||||||| || Sbjct 202950 CTCTGTCGAATTGGCCAAGGAGCAAGGACCTTACTCTACCTTTGAGGGCTCTCCCGCCTC 202891 Query 76399 CCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCT--CAACTACGACTGG 76456 | | || | ||||||||||| ||||||| | ||||| || || | || || ||| Sbjct 202890 CGAGGGCATTCTTCAGTTTGACATGTGGG-ACGTGAAGCC-TTCTGACCTCTGGGAGTGG 202833 Query 76457 GATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCA 76516 || ||| ||||| | ||||||||| | || |||| ||| || || | || || Sbjct 202832 AATAGTCTGAAGGAGCAGATCAAGGAGCATGGAATTCGCAACTCACTGCTGCTCGCCCCC 202773 Query 76517 ATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACA 76576 ||||| || || || ||| | || || | ||||| ||||| ||||| || || ||||| Sbjct 202772 ATGCCTACGGCTTCTACCTCTCAGATTCTAGGTAACAATGAGTGCTTCGAGCCTTACACG 202713 Query 76577 ACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTC 76636 | ||||| |||| | | ||| |||||||| || |||||||| || Sbjct 202712 TCCAACATTTACCAACGCCGTGTCCTGGCAGGTGAATTCCAGGTTGTCAACCCCTGGCTG 202653 Query 76637 GTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGA---TCTCA-TGGT 76692 | || || ||| | || || || ||||| | | ||||||| | | ||| || Sbjct 202652 CTGAAAGATCTCGTCGACATGGGCCTTTGGTCTGATGCTATGAAGAACCGTATCATTGCC 202593 Query 76693 GAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCTA 76752 || | | ||||||||||| |||||| | | ||||| | || ||||| |||||| Sbjct 202592 GAGAAC----GGTTCCATTCAGAATATCCCCAACATCCCGGCCGACATCAAAGCTCTCTA 202537 Query 76753 CCGCACAGTGTGGGAAA--TCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGT 76810 | || || ||||||| || | | | | ||| | | ||||| || || |||||| Sbjct 202536 CAAAACTGTTTGGGAAATTTCTCAACG--ACACGTCGTGCAGATGGCTGCTGACCGTGGT 202479 Query 76811 CGCTTCATTGATCAAAGTCAAAG--TATGAATCTATTCATGGAAAGTCCAACGATGTCCA 76868 ||||| || | |||| || | | || | |||| | ||| || ||| || Sbjct 202478 GCTTTCATCGACC--AGTCCCAGTCTCTTAACATTCACATGAAGGATCCCACTATGGGCA 202421 Query 76869 AGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTA 76926 || || |||| ||||| | || ||||||| ||| ||||| || || |||||||| Sbjct 202420 AGATCACTTCCATGCACTTTACCGGCTGGAAACTGGGCCTCAAGACGGGCATGTACTA 202363 >seq96 Length=87723 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTCGCTCCTTCGCCGAGCG 65081 |||||||| | ||||| || ||| || | |||||| || | ||||||| |||| Sbjct 52478 AAGAAGGCAGATTGGGCTATCCGTTGGATTCAGGACAAAGAATC-CAGCTTCGCCCAGCG 52420 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCG-CTATTT 65140 | | |||| ||||| ||||| ||||| |||||| ||| | || ||| |||| | Sbjct 52419 CTTGGTTGCTTTTGCTGCCGTGGAAGGTATTTTCTTCAGCGGTGCTTT-TGCTTCTATCT 52361 Query 65141 ATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCC 65200 ||| |||||||||| || | ||||| || || |||||| || ||| | || || | Sbjct 52360 TCTGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAATTAATCTCGC 52301 Query 65201 GAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 | ||||||||||| ||| || |||||| Sbjct 52300 GTGATGAGGGTCTGCACACAGACTTTGCC 52272 >seq9 Length=558614 Score = 86.0 bits (94), Expect = 7e-12 Identities = 294/449 (65%), Gaps = 22/449 (5%) Strand=Plus/Minus Query 175243 TTTCTCAAGCAACCCGAGAGATATTTTG-GAAGT--GGTGCCAAGATCCCCCGAGGCGCC 175299 |||||||| || || |||| | |||| |||| || |||||||| || || || || Sbjct 366435 TTTCTCAAACAGCCTGAGA---AGTTTGAGAAGCTAGGAGCCAAGATTCCTCGCGGAGCT 366379 Query 175300 CTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAA 175359 | |||||||| |||||||| || || || || | || ||||| || |||||| Sbjct 366378 ATCCTCGCGGGACCTCCAGGTACTGGCAAAACGCTTATTGCTAAAGCCACGGCAGGTGAA 366319 Query 175360 TCAAATGTCCCATTCATCCAGTGCTCTGCCG--CAAACTTTGTGGAGATGTTTGTTGGTG 175417 || ||| |||||| | || | | || | | | ||||| || ||||||||||||| Sbjct 366318 TCTGGTGTTCCATTCTTT-AGCG-TAAGCGGTTCCGAATTTGTAGAAATGTTTGTTGGTG 366261 Query 175418 TGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTG 175477 | ||| | | |||| || ||||| |||| | ||| | ||| ||| || || Sbjct 366260 TTGGTCCTTCACGGGTCCGAGATCTATTTGCCGAAGGTCGCAAGAATGCACCCTGCATCA 366201 Query 175478 TCTTCATTGATGAGATTGATGCGGTGGGCA-AG-----CAACGCAGCGCTGGTGGTATGC 175531 | ||||||||||| || ||||| | || | || ||| |||| | || | Sbjct 366200 TTTTCATTGATGAAATCGATGCCATTGGTAGAGCTCGTCAAGAAAGCGGACGAGGCTTCG 366141 Query 175532 CAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTG 175591 | || || ||| ||||| || | ||||| | || || || |||||||| || Sbjct 366140 GTGGCAACGATGAGCGAGAAGCTACGCTGAATCAGATTCTGACAGAAATGGATGGATTCA 366081 Query 175592 ACA---ATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATG 175648 ||| |||| | |||| || | || | ||| || || | ||||| |||||| Sbjct 366080 ACACCCGTGAGCAAG---TTGTCGTGCTGGCCGGCACCAACCGAGCCGATATTCTTGATA 366024 Query 175649 ACGCCCTCCTTCGCCCGGGTCGTTTTGAT 175677 | || ||| | || || || ||||||||| Sbjct 366023 AGGCTCTCATGCGTCCCGGGCGTTTTGAT 365995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596549987774400