Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq96 113 7e-20 >seq96 Length=87723 Score = 113 bits (124), Expect = 7e-20 Identities = 197/286 (69%), Gaps = 3/286 (1%) Strand=Plus/Plus Query 18422 TCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCT 18481 || || || || ||||||||||| | ||| || |||| || || || | ||||| Sbjct 52591 TCCTTGATGTAGGTGTCGATTAAGAGAGAGTATGTTTCCGAGTGGATATTCTCCATCATG 52650 Query 18482 ATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAAAATCTTTCT 18541 ||||| || | ||||| | | |||||| || ||| | |||| || | || Sbjct 52651 ATCTGGAATCCGTAAAAGCAACGAGCCTCAGGGACTTGGACTTCGCCGCTGAAGCGCTCA 52710 Query 18542 ACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATG 18601 ||||| ||||| || || || ||||||| | || || ||||||| || | ||| Sbjct 52711 ACCAAGTTCTCGTTGACAATGCCGTCAGAGGCAGCAAAGAATGCCAGAATGTGGGAGATG 52770 Query 18602 AAATGTTTTTCATTATCCTTGAGA---TTGTTCCATTCATCTATATCTTTTGATAGATCA 18658 |||| ||| |||| || || ||| |||||||| || | | |||||| || ||||| Sbjct 52771 AAATATTTCTCATCGTCATTCAGACGATTGTTCCAGTCGTGCAAATCTTTCGACAGATCG 52830 Query 18659 ACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATTT 18704 | ||||| | ||||| ||||| | ||||||| ||||||||||| Sbjct 52831 ATCTCTTCGGCCGTCCAGAAAGAAGCCTCGGCCTTTTTGTACATTT 52876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731847939708000