Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq96 118 3e-21 seq37 114 4e-20 seq3 89.7 2e-12 seq9 84.2 6e-11 >seq96 Length=87723 Score = 118 bits (130), Expect = 3e-21 Identities = 325/493 (66%), Gaps = 4/493 (1%) Strand=Plus/Minus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 ||||||| ||| ||||| | || |||||||| ||||| |||||||| | | Sbjct 52492 TTCCTTGCATTCGCAAGAAGGCAGATTGGGCTATCCGTTGGATTCAGGACAAAGAATCCA 52433 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 | || || || | ||||||||||||| || || || ||||| ||||| ||||| | Sbjct 52432 GCTTCGCCCAGCGCTTGGTTGCTTTTGCTGCCGTGGAAGGTATTTTCTTCAGCGGTGC-T 52374 Query 133557 TCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAAC 133615 | ||| ||||| || ||||| || |||||||| | | || || || || || ||| Sbjct 52373 TTTGCTTCTATCTTCTGGCTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAAC 52314 Query 133616 GAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTTACTTCACTCTAAA 133675 ||| | || || | || |||| || ||||| || |||||| || || |||||| | Sbjct 52313 GAATTAATCTCGCGTGATGAGGGTCTGCACACAGACTTTGCCTGCTTGCTGCACTCTCAC 52254 Query 133676 TTAGAGCGACCACTCAAAAAGAATAAGATTGAAGAAATTATTAGAGAAGCGGTTGAAATT 133735 || ||| | | || ||| | | ||| || | ||||||| ||| || || || Sbjct 52253 TTGAAGCACCGAGCCAGCAAGCAGATGATCCAACAGATTATTACAGATGCTGTCACCATC 52194 Query 133736 GAGGTTGAATTTATCAATAGTGCTCTGCCGTGCCGTTTAATTGGTATGAATGATGTGCTG 133795 ||| || ||| | | | ||| |||| || | || |||| ||||||| || Sbjct 52193 GAGAAAGAGTTTCTGACTGAGGCTTTGCCATGTGCTCTACTTGGCATGAATGCCACATTG 52134 Query 133796 ATGCAGCGTTATATTGAATTTGTAGCTGACAGATTGGCCGTTCAGTTAGGTGGGGATAAG 133855 ||| | | || ||||| |||||||| || | || ||| | ||| || ||| Sbjct 52133 ATGAAACAGTACATTGAGTTTGTAGCCGATCGCCTGCTTGTTGCTCTTGGTAATGAGAAG 52074 Query 133856 ATTTACGGTTCCGCCAATCCATTCGACTGGATGGAGAGCATTAGCATTGAAT-CAAAGAC 133914 | ||| | || ||||| || |||| ||||||| || | ||||| | ||||| Sbjct 52073 GTGTACAAGACGGCTAATCCTTTTGACTTCATGGAGAACA-TCTCATTGGGTGGCAAGAC 52015 Query 133915 TAATTTCTTCGAG 133927 || ||||||||| Sbjct 52014 AAACTTCTTCGAG 52002 >seq37 Length=257599 Score = 114 bits (126), Expect = 4e-20 Identities = 332/507 (65%), Gaps = 8/507 (2%) Strand=Plus/Minus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||| | |||||| |||||||| |||||||| ||||| || ||||| || || | Sbjct 113043 GCACCGTGGGCAATCATGCAATCACGTTCCATTTCTCCGAATCGGAGACCGCCGTCTCTG 112984 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604 || | ||| || |||| || || || | | || |||||| || ||| ||| Sbjct 112983 GCACGACCTTCCACAGGTTGTCGTGTCATGATCTGCACAGGACCACGGGCACGGGCATGA 112924 Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATGCTC 251664 ||| |||| ||||| || |||||| |||||| | | || |||| ||||| | Sbjct 112923 ATCTTGTCATCCACCATGTGACGGAGACGTTGGTAGTACGTCGGGCCGAAGAAGACCTGC 112864 Query 251665 GAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGATTCATAA 251724 | || || || || || | | || ||||| | ||| || | || | ||| Sbjct 112863 GCCCTCAATTTCTTACCCGTGTGGCCATTGTACATGATTTCAAAGCCTCTTGACTGATAG 112804 Query 251725 CCAAGTTTCTGTA---GCTCTGAAGCAATATCACCAATCTTGAATTTGCTAAAACTGGTG 251781 ||| | || | | ||||||| | || | || | | | | ||| ||| Sbjct 112803 CCATGCTTGCGCAACAGCTCTGACACCGAGTCGACGGTCACG---TCGGTGAAAGGCGTG 112747 Query 251782 CCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGCCTAAAAGTGTCTCTTTCAGTTGG 251841 | || || | | |||| || | ||||||| | | | ||| | | ||| Sbjct 112746 GCATCACCCTCCATACCCTCAAGAGTAGACACTTTACTCAGCAAACACTCAATTAAATGG 112687 Query 251842 GCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCA 251901 || || ||||| || |||||||| || ||||||||||||||||| ||| | | || Sbjct 112686 GCAATTGTCATTCGCGACGGAATAGCGTGTGGATTGATGATGATGTCAGGTGTGACACCT 112627 Query 251902 TCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTGTCC 251960 || |||||| ||||| |||| || || ||| || ||||| || ||||||||||| Sbjct 112626 TCTCGAGTGAACGGCATGTCCTCTT-GTCGGTAAGTGACACCAATGGTACCCTTTTGTCC 112568 Query 251961 GTGACGAGAACTGAACTTATCACCAAT 251987 |||||||||| || ||||||||||| Sbjct 112567 GTGACGAGAAGCAAATTTATCACCAAT 112541 >seq3 Length=769506 Score = 89.7 bits (98), Expect = 2e-12 Identities = 175/254 (69%), Gaps = 6/254 (2%) Strand=Plus/Plus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 || ||||| ||||| |||||| | || || || || ||||| || ||||| | ||| Sbjct 495056 CGTCGCTGGATATATCCAGTTTCGGCAGTCTTGACTGCAGTATCGATGAGACCTTCTCGA 495115 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTC 302711 ||| |||| ||||||||||| | ||| || ||| || || | | | ||| | || Sbjct 495116 CCAGCCATGGCATGGAAGAAAAACTCGGATGG-CGTGAGACCACGGAGGTACGAGTTTTC 495174 Query 302712 AACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTT 302771 ||| || ||||| || ||||| |||| ||| ||| || || || || ||||| | || Sbjct 495175 AACAAAGCCACGAGCTTCGGGGGAATAATCGTCCTTTGTGAAATGCGGTAGGGTTCGGTA 495234 Query 302772 CTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGA--AATC 302829 | | || | || ||||| || || || || ||||||| || | || || | || Sbjct 495235 TTTGAAACCAAAGGGAATACGTTTCCCTTCGACAATCTGCTGACC--GACAAGAGCAGTC 495292 Query 302830 ATCTGCGAAATATT 302843 ||||| ||||| || Sbjct 495293 ATCTGAGAAATGTT 495306 >seq9 Length=558614 Score = 84.2 bits (92), Expect = 6e-11 Identities = 142/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 289028 TACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATT-TTGTCTCGCAATT 289086 |||||| ||||| ||||| ||||||||||| | || || | ||| ||| || || Sbjct 366171 TACCAATGGCATCGATTTCATCAATGAAAATGATGCAGGGTGCATTCTTG---CGACCTT 366227 Query 289087 --GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144 ||||||| |||| || || || | |||| ||||||| |||||||||||||||| | Sbjct 366228 CGGCAAATAGATCTCGGACCCGTGAAGGACCAACACCAACAAACATTTCTACAAATTCGG 366287 Query 289145 AAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 || || ||| || ||||| ||| | ||| ||||| || | || | ||| | Sbjct 366288 AACCGCTTACGCTAAAGAATGGAACACCAGATTCACCTGCCGTGGCTTTAGCAATAAGCG 366347 Query 289205 TCTTACCTGTTCCAGGTGGTCCC 289227 | || || || || || |||||| Sbjct 366348 TTTTGCCAGTACCTGGAGGTCCC 366370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471768004346310