Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq5 170 2e-36 seq70 116 5e-20 seq96 93.3 5e-13 >seq5 Length=693879 Score = 170 bits (188), Expect = 2e-36 Identities = 340/502 (68%), Gaps = 15/502 (3%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||| || | ||||||| ||| || || || |||||||| | || || ||||| Sbjct 203715 CTGGTCGACATATCTGGCCGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTGGA 203774 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 | ||||||||||| || | ||||| ||| | |||||| | ||| | ||||| Sbjct 203775 CGTCCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCGCGAATGCGGTGGACATTCAAGCC 203834 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| || || ||| ||||||||| | ||||| ||||||||||| ||||||||||| Sbjct 203835 GATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTC 203894 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| ||| |||||||||| ||||| ||||| ||||| || || | ||||| Sbjct 203895 GATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGACGACAGCTGACATTGAGGTGTGCC 203954 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 |||||||| || ||||| | || ||||| | | | |||||| | |||||| Sbjct 203955 AGCGTTGAATAGTGTGGGTGAGGCGTGTGTGAAGAGTTTGCTGGACATGAGATGGTAGGT 204014 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 | || || ||| | | || ||| || ||| || |||| ||||| Sbjct 204015 TTCCAGGACTCGCTCAA---TATTGTC----TC------CCC--AGATCCCGACAGCGAC 204059 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||| | ||||| |||||| |||||||| | |||| | |||| || || || Sbjct 204060 ACGCATAATCATGTGCTGGGGTCGCTCGACAATCTTGCCGTTGAGCTTGAGAAGATATGA 204119 Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544 ||| || ||| ||| ||||||||| | || ||||| | ||| | | ||||| Sbjct 204120 CCGCTCCAAAGTCTTGAAGCCAAAGTACTGATAGTTGAAATCTCTGTCATAGACAATGGC 204179 Query 1630545 GGCGTCGAGGGCATCGCGGTGC 1630566 || |||||| | || | |||| Sbjct 204180 GGAGTCGAGCTCCTCCCTGTGC 204201 Score = 105 bits (116), Expect = 8e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 1627868 CGTCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGGCGGG 1627927 |||||||||| ||||| ||||| || || ||||||||||| |||| ||| || |||| Sbjct 203045 CGTCGGCGAGACCCTGGACGCCAACACCAATCGGCCGGTGTCGCATGTTGCTGTTCCGGG 203104 Query 1627928 CCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTGCCCACCACGACCT 1627987 |||| | || ||||||||||||| || || | | ||| ||||||| || ||||||| Sbjct 203105 CCTCCTGGACGGGGTAGTGGTTGACATCAATGATTCTGTTCAGGTTGCGAACAACGACCT 203164 Query 1627988 GGACGATCTCGTGCAG 1628003 || || |||||| || Sbjct 203165 GGGTGACCTCGTGGAG 203180 >seq70 Length=130796 Score = 116 bits (128), Expect = 5e-20 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| |||| ||||| |||||||||||||| || ||| |||| |||||| |||| |||||| Sbjct 79436 GCCTCCAATTACCTTGACATCAAGCCTCTTCTTGATGTTGGTTGCAAGACTGTTGCCAAC 79377 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 ||||||||||||||||| || || || || || ||||| || ||||| Sbjct 79376 ATGATCAAGGGCAAGTCACCTGAAGAAATTCGAAAGACTTTCAACAT 79330 >seq96 Length=87723 Score = 93.3 bits (102), Expect = 5e-13 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||| ||||| || |||||| ||||| |||||||| | | ||||| Sbjct 51976 GCCTTCTGGTACTCACCCACTCGTTTCTCGAAGAAGTTTGTCTTGCCACCCAATGAGATG 52035 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | || || || | ||||||||| ||| || || || | | Sbjct 52036 TTCTCCATGAAGTCAAAAGGATTAGCCGTCTTGTACACCTTCTCATTACCAAGAGCAACA 52095 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 |||||||| ||||| |||||||| |||||||| ||| | ||| |||||||| | Sbjct 52096 AGCAGGCGATCGGCTACAAACTCAATGTACTGTTTCATCAATGTGGCATTCATGCCAAGT 52155 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGAT 868911 || || |||| | ||| ||| ||||||||||||||| Sbjct 52156 AGAGCACATGGCAAAGCCTCAGTCAGAAACTCTTTCTCGAT 52196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106923369883710