Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq5 170 2e-36
seq70 116 5e-20
seq96 93.3 5e-13
>seq5
Length=693879
Score = 170 bits (188), Expect = 2e-36
Identities = 340/502 (68%), Gaps = 15/502 (3%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||||||||| || | ||||||| ||| || || || |||||||| | || || |||||
Sbjct 203715 CTGGTCGACATATCTGGCCGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTGGA 203774
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
| ||||||||||| || | ||||| ||| | |||||| | ||| | |||||
Sbjct 203775 CGTCCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCGCGAATGCGGTGGACATTCAAGCC 203834
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||| || || ||| ||||||||| | ||||| ||||||||||| |||||||||||
Sbjct 203835 GATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTC 203894
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
||| ||| |||||||||| ||||| ||||| ||||| || || | |||||
Sbjct 203895 GATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGACGACAGCTGACATTGAGGTGTGCC 203954
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
|||||||| || ||||| | || ||||| | | | |||||| | ||||||
Sbjct 203955 AGCGTTGAATAGTGTGGGTGAGGCGTGTGTGAAGAGTTTGCTGGACATGAGATGGTAGGT 204014
Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424
| || || ||| | | || ||| || ||| || |||| |||||
Sbjct 204015 TTCCAGGACTCGCTCAA---TATTGTC----TC------CCC--AGATCCCGACAGCGAC 204059
Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484
||||| | ||||| |||||| |||||||| | |||| | |||| || || ||
Sbjct 204060 ACGCATAATCATGTGCTGGGGTCGCTCGACAATCTTGCCGTTGAGCTTGAGAAGATATGA 204119
Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544
||| || ||| ||| ||||||||| | || ||||| | ||| | | |||||
Sbjct 204120 CCGCTCCAAAGTCTTGAAGCCAAAGTACTGATAGTTGAAATCTCTGTCATAGACAATGGC 204179
Query 1630545 GGCGTCGAGGGCATCGCGGTGC 1630566
|| |||||| | || | ||||
Sbjct 204180 GGAGTCGAGCTCCTCCCTGTGC 204201
Score = 105 bits (116), Expect = 8e-17
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 1627868 CGTCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGGCGGG 1627927
|||||||||| ||||| ||||| || || ||||||||||| |||| ||| || ||||
Sbjct 203045 CGTCGGCGAGACCCTGGACGCCAACACCAATCGGCCGGTGTCGCATGTTGCTGTTCCGGG 203104
Query 1627928 CCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTGCCCACCACGACCT 1627987
|||| | || ||||||||||||| || || | | ||| ||||||| || |||||||
Sbjct 203105 CCTCCTGGACGGGGTAGTGGTTGACATCAATGATTCTGTTCAGGTTGCGAACAACGACCT 203164
Query 1627988 GGACGATCTCGTGCAG 1628003
|| || |||||| ||
Sbjct 203165 GGGTGACCTCGTGGAG 203180
>seq70
Length=130796
Score = 116 bits (128), Expect = 5e-20
Identities = 90/107 (84%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||| |||| ||||| |||||||||||||| || ||| |||| |||||| |||| ||||||
Sbjct 79436 GCCTCCAATTACCTTGACATCAAGCCTCTTCTTGATGTTGGTTGCAAGACTGTTGCCAAC 79377
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292
||||||||||||||||| || || || || || ||||| || |||||
Sbjct 79376 ATGATCAAGGGCAAGTCACCTGAAGAAATTCGAAAGACTTTCAACAT 79330
>seq96
Length=87723
Score = 93.3 bits (102), Expect = 5e-13
Identities = 153/221 (69%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| |||||| ||||| || |||||| ||||| |||||||| | | |||||
Sbjct 51976 GCCTTCTGGTACTCACCCACTCGTTTCTCGAAGAAGTTTGTCTTGCCACCCAATGAGATG 52035
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | || || || | ||||||||| ||| || || || | |
Sbjct 52036 TTCTCCATGAAGTCAAAAGGATTAGCCGTCTTGTACACCTTCTCATTACCAAGAGCAACA 52095
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|||||||| ||||| |||||||| |||||||| ||| | ||| |||||||| |
Sbjct 52096 AGCAGGCGATCGGCTACAAACTCAATGTACTGTTTCATCAATGTGGCATTCATGCCAAGT 52155
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGAT 868911
|| || |||| | ||| ||| |||||||||||||||
Sbjct 52156 AGAGCACATGGCAAAGCCTCAGTCAGAAACTCTTTCTCGAT 52196
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106923369883710
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |