Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq5 138 2e-26 seq70 98.7 2e-14 seq96 96.9 5e-14 >seq5 Length=693879 Score = 138 bits (152), Expect = 2e-26 Identities = 335/504 (66%), Gaps = 19/504 (4%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||||||||| | ||||||| ||| || || || |||||||| | | || ||||| Sbjct 203715 CTGGTCGACATATCTGGCCGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTGGA 203774 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 | ||||||||||| || | ||||| ||| | |||||| | ||| | ||||| Sbjct 203775 CGTCCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCGCGAATGCGGTGGACATTCAAGCC 203834 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| || || ||| ||||||||| | ||||| | || ||||| || ||||||||||| Sbjct 203835 GATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTC 203894 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| ||| |||||||||| | || ||||| ||||| || | | ||||| Sbjct 203895 GATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGACGACAGCTGACATTGAGGTGTGCC 203954 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTG--GGACATGGCCTCGTAG 2073837 || ||||| || ||||| | || ||| | || | ||| ||||||| | |||| Sbjct 203955 AGCGTTGAATAGTGTGGGTGAGGCGTGTGTG-AAGAGT-TTGCTGGACATGAGATGGTAG 204012 Query 2073838 GTGGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCG 2073897 || | || || ||| | | | || ||| || || |||| ||| Sbjct 204013 GTTTCCAGGACTCGCTCAA-----TATT----GTC------TCCCCAGATCCCGACAGCG 204057 Query 2073898 ACGCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTAG 2073957 || ||||| ||||||| ||||||||||||||| | | || | |||| || || Sbjct 204058 ACACGCATAATCATGTGCTGGGGTCGCTCGACAATCTTGCCGTTGAGCTTGAGAAGATAT 204117 Query 2073958 GACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGATG 2074017 ||||| || ||| | |||||||||| ||| | || | || | | ||| Sbjct 204118 GACCGCTCCAAAGTCTTGAAGCCAAAGTACTGATAGTTGAAATCTCTGTCATAGACAATG 204177 Query 2074018 GCGGCGTCGAGGGCCTCCTTGTGC 2074041 |||| |||||| ||||| ||||| Sbjct 204178 GCGGAGTCGAGCTCCTCCCTGTGC 204201 Score = 96.9 bits (106), Expect = 5e-14 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 2070052 GCCGCATGGTAGATCGTCTCAAAGATGGTGCG-GTTGAGGCGACGCGCGCCGGCGCTCTC 2070110 || ||||||||||| |||||||| || ||| |||||| ||| || | | | ||| Sbjct 202960 GCAGCATGGTAGATGGTCTCAAATATC-TGCTTGTTGAGCTCACGGGCCTCAGGGGACTC 203018 Query 2070111 CCACGGCAGGTCCAT--CATGGCAAACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATC 2070168 | |||| | || || || || |||||||| || ||||| ||||| || || ||| Sbjct 203019 AAATGGCATGCGCAAGGCAAGGAAA--GCGTCGGCGAGACCCTGGACGCCAACACCAATC 203076 Query 2070169 GGCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATC 2070228 |||||||| |||| ||| || ||||||||| | || ||||||||||||| || || Sbjct 203077 GGCCGGTGTCGCATGTTGCTGTTCCGGGCCTCCTGGACGGGGTAGTGGTTGACATCAATG 203136 Query 2070229 ACGCGGTTGAGGTTG 2070243 | | ||| |||||| Sbjct 203137 ATTCTGTTCAGGTTG 203151 >seq70 Length=130796 Score = 98.7 bits (108), Expect = 2e-14 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| |||| ||||| ||||||||||| || || ||| | || |||||||| || |||||| Sbjct 79436 GCCTCCAATTACCTTGACATCAAGCCTCTTCTTGATGTTGGTTGCAAGACTGTTGCCAAC 79377 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753 | |||||||||||||| || || || || || ||||| || ||||| Sbjct 79376 ATGATCAAGGGCAAGTCACCTGAAGAAATTCGAAAGACTTTCAACAT 79330 >seq96 Length=87723 Score = 96.9 bits (106), Expect = 5e-14 Identities = 173/253 (68%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| ||||| ||||| || |||||| ||||| |||||||| | | Sbjct 51968 TGACACCAGCCTTCTGGTACTCACCCACTCGTTTCTCGAAGAAGTTTGTCTTGCCACCCA 52027 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 ||||| |||||| | || || || |||||| ||| |||||| || | Sbjct 52028 ATGAGATGTTCTCCATGAAGTCAAAAGGATTAGCCGTCTTGTACACCTTCTCATTACCAA 52087 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | |||||||||| ||||| || || ||||||||||| ||| | | ||| |||| Sbjct 52088 GAGCAACAAGCAGGCGATCGGCTACAAACTCAATGTACTGTTTCATCAATGTGGCATTCA 52147 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||| | || || |||| | ||| | | ||||||||||||||| ||| || | Sbjct 52148 TGCCAAGTAGAGCACATGGCAAAGCCTCAGTCAGAAACTCTTTCTCGATGGTGACAGCAT 52207 Query 794131 CGATGATGATCTG 794143 | | || ||||| Sbjct 52208 CTGTAATAATCTG 52220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915966634904570