Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq5 138 2e-26
seq70 98.7 2e-14
seq96 96.9 5e-14
>seq5
Length=693879
Score = 138 bits (152), Expect = 2e-26
Identities = 335/504 (66%), Gaps = 19/504 (4%)
Strand=Plus/Plus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
|||||||||||| | ||||||| ||| || || || |||||||| | | || |||||
Sbjct 203715 CTGGTCGACATATCTGGCCGTGTTGTTGAAAACACGAAGCATGGGAATGACACCATTGGA 203774
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
| ||||||||||| || | ||||| ||| | |||||| | ||| | |||||
Sbjct 203775 CGTCCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCGCGAATGCGGTGGACATTCAAGCC 203834
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
||| || || ||| ||||||||| | ||||| | || ||||| || |||||||||||
Sbjct 203835 GATACCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCATAGATGCCCTC 203894
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779
||| ||| |||||||||| | || ||||| ||||| || | | |||||
Sbjct 203895 GATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGACGACAGCTGACATTGAGGTGTGCC 203954
Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTG--GGACATGGCCTCGTAG 2073837
|| ||||| || ||||| | || ||| | || | ||| ||||||| | ||||
Sbjct 203955 AGCGTTGAATAGTGTGGGTGAGGCGTGTGTG-AAGAGT-TTGCTGGACATGAGATGGTAG 204012
Query 2073838 GTGGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCG 2073897
|| | || || ||| | | | || ||| || || |||| |||
Sbjct 204013 GTTTCCAGGACTCGCTCAA-----TATT----GTC------TCCCCAGATCCCGACAGCG 204057
Query 2073898 ACGCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTAG 2073957
|| ||||| ||||||| ||||||||||||||| | | || | |||| || ||
Sbjct 204058 ACACGCATAATCATGTGCTGGGGTCGCTCGACAATCTTGCCGTTGAGCTTGAGAAGATAT 204117
Query 2073958 GACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGATG 2074017
||||| || ||| | |||||||||| ||| | || | || | | |||
Sbjct 204118 GACCGCTCCAAAGTCTTGAAGCCAAAGTACTGATAGTTGAAATCTCTGTCATAGACAATG 204177
Query 2074018 GCGGCGTCGAGGGCCTCCTTGTGC 2074041
|||| |||||| ||||| |||||
Sbjct 204178 GCGGAGTCGAGCTCCTCCCTGTGC 204201
Score = 96.9 bits (106), Expect = 5e-14
Identities = 141/195 (72%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 2070052 GCCGCATGGTAGATCGTCTCAAAGATGGTGCG-GTTGAGGCGACGCGCGCCGGCGCTCTC 2070110
|| ||||||||||| |||||||| || ||| |||||| ||| || | | | |||
Sbjct 202960 GCAGCATGGTAGATGGTCTCAAATATC-TGCTTGTTGAGCTCACGGGCCTCAGGGGACTC 203018
Query 2070111 CCACGGCAGGTCCAT--CATGGCAAACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATC 2070168
| |||| | || || || || |||||||| || ||||| ||||| || || |||
Sbjct 203019 AAATGGCATGCGCAAGGCAAGGAAA--GCGTCGGCGAGACCCTGGACGCCAACACCAATC 203076
Query 2070169 GGCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATC 2070228
|||||||| |||| ||| || ||||||||| | || ||||||||||||| || ||
Sbjct 203077 GGCCGGTGTCGCATGTTGCTGTTCCGGGCCTCCTGGACGGGGTAGTGGTTGACATCAATG 203136
Query 2070229 ACGCGGTTGAGGTTG 2070243
| | ||| ||||||
Sbjct 203137 ATTCTGTTCAGGTTG 203151
>seq70
Length=130796
Score = 98.7 bits (108), Expect = 2e-14
Identities = 86/107 (80%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
||| |||| ||||| ||||||||||| || || ||| | || |||||||| || ||||||
Sbjct 79436 GCCTCCAATTACCTTGACATCAAGCCTCTTCTTGATGTTGGTTGCAAGACTGTTGCCAAC 79377
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753
| |||||||||||||| || || || || || ||||| || |||||
Sbjct 79376 ATGATCAAGGGCAAGTCACCTGAAGAAATTCGAAAGACTTTCAACAT 79330
>seq96
Length=87723
Score = 96.9 bits (106), Expect = 5e-14
Identities = 173/253 (68%), Gaps = 0/253 (0%)
Strand=Plus/Plus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| ||||| ||||| || |||||| ||||| |||||||| | |
Sbjct 51968 TGACACCAGCCTTCTGGTACTCACCCACTCGTTTCTCGAAGAAGTTTGTCTTGCCACCCA 52027
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
||||| |||||| | || || || |||||| ||| |||||| || |
Sbjct 52028 ATGAGATGTTCTCCATGAAGTCAAAAGGATTAGCCGTCTTGTACACCTTCTCATTACCAA 52087
Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070
| | |||||||||| ||||| || || ||||||||||| ||| | | ||| ||||
Sbjct 52088 GAGCAACAAGCAGGCGATCGGCTACAAACTCAATGTACTGTTTCATCAATGTGGCATTCA 52147
Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130
|||| | || || |||| | ||| | | ||||||||||||||| ||| || |
Sbjct 52148 TGCCAAGTAGAGCACATGGCAAAGCCTCAGTCAGAAACTCTTTCTCGATGGTGACAGCAT 52207
Query 794131 CGATGATGATCTG 794143
| | || |||||
Sbjct 52208 CTGTAATAATCTG 52220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7915966634904570
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |