Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq20 113 3e-20
seq13 100 2e-16
seq4 84.2 2e-11
>seq20
Length=366416
Score = 113 bits (124), Expect = 3e-20
Identities = 165/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 29557 TGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCC 29616
|| || || | |||||||| |||||| || | || || || || |||||||| || ||
Sbjct 156146 TGGCCACCACGCAAACGCAACACCAAGTGCAAGGTTGACTCCTTCTGAATGTTGTAGTCT 156205
Query 29617 GCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGC 29676
|||| || || ||| || || ||||| || || | || | | ||||| || ||
Sbjct 156206 GCAAGTGTCCGTCCATCCTCAAGCTGTTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGA 156265
Query 29677 GGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTC 29735
||||| || ||||||||||| ||| |||| || || | |||| ||||||||| |||
Sbjct 156266 GGAATGCCTTCTTTGTCTTG-AATCTTTGACTTCACGTTGTCTATTGTGTCAGAAGATTC 156324
Query 29736 TACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| ||||| || || || || || || | ||| || || || ||||||||
Sbjct 156325 CACCTCAAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 156375
Score = 104 bits (114), Expect = 2e-17
Identities = 150/209 (72%), Gaps = 2/209 (1%)
Strand=Plus/Plus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| || || | |||||| ||||| || || || ||||||||||| || | || ||
Sbjct 156389 CGGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTATAATCGGCGAGCGTACGGCCG 156448
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| || | ||||||||||| | |||| | ||||| || || ||||| || || |||
Sbjct 156449 TCTTCCAACTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTG 156508
Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
||||| ||| |||| ||||||| | || | ||| |||||| ||| || || || || ||
Sbjct 156509 TCTTG-AATCTTTGATTTGACATTGTCGATAGTATCAGAAGATTCCACCTCGAGGGTAAT 156567
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATA 29779
|| || || || || || || |||| ||
Sbjct 156568 GGTCTTTCCGGTCAAAGTCTTGACAACTA 156596
>seq13
Length=451911
Score = 100 bits (110), Expect = 2e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
||||||||||| || || ||| || || || ||||| || || || | |||||| |
Sbjct 17287 CGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA 17346
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| ||||| || ||||||||| | || | || ||||| || || || || ||||| |||
Sbjct 17347 TCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGGATGCCCTCCTTG 17406
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
|| || | ||| ||||| | || | ||||| ||| || || || || || ||
Sbjct 17407 TCCTGGATTTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATC 17466
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| || || || | ||| || || || |||||||| ||
Sbjct 17467 GTCTTCCCTGTGAGGGTCTTGACGAAAATCTGCATCTT 17504
>seq4
Length=697727
Score = 84.2 bits (92), Expect = 2e-11
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 29599 TTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATC 29658
|| || || || || || || | ||| || ||| || || || ||||||||| | |||
Sbjct 592302 TTCTGGATATTGTAGTCTGCCAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 592243
Query 29659 AATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCT 29718
|||| ||||| || || ||||||||||| || || |||| || ||||||| | ||
Sbjct 592242 AATCGCTGCTGGTCAGGGGGAATACCCTCCTTATCCTGTATCTTGGATTTGACATTGTCG 592183
Query 29719 ACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAA 29777
| |||||||| || || || || || || || || || || ||||| || || ||
Sbjct 592182 ATTGTGTCAGAGGACTCGACCTCTAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAA 592124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385206852520830
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |