Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq20 113 3e-20 seq13 100 2e-16 seq4 84.2 2e-11 >seq20 Length=366416 Score = 113 bits (124), Expect = 3e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 29557 TGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCC 29616 || || || | |||||||| |||||| || | || || || || |||||||| || || Sbjct 156146 TGGCCACCACGCAAACGCAACACCAAGTGCAAGGTTGACTCCTTCTGAATGTTGTAGTCT 156205 Query 29617 GCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGC 29676 |||| || || ||| || || ||||| || || | || | | ||||| || || Sbjct 156206 GCAAGTGTCCGTCCATCCTCAAGCTGTTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGA 156265 Query 29677 GGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTC 29735 ||||| || ||||||||||| ||| |||| || || | |||| ||||||||| ||| Sbjct 156266 GGAATGCCTTCTTTGTCTTG-AATCTTTGACTTCACGTTGTCTATTGTGTCAGAAGATTC 156324 Query 29736 TACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || || || || || | ||| || || || |||||||| Sbjct 156325 CACCTCAAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 156375 Score = 104 bits (114), Expect = 2e-17 Identities = 150/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || || | |||||| ||||| || || || ||||||||||| || | || || Sbjct 156389 CGGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTATAATCGGCGAGCGTACGGCCG 156448 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | ||||||||||| | |||| | ||||| || || ||||| || || ||| Sbjct 156449 TCTTCCAACTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTG 156508 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| ||| |||| ||||||| | || | ||| |||||| ||| || || || || || Sbjct 156509 TCTTG-AATCTTTGATTTGACATTGTCGATAGTATCAGAAGATTCCACCTCGAGGGTAAT 156567 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATA 29779 || || || || || || || |||| || Sbjct 156568 GGTCTTTCCGGTCAAAGTCTTGACAACTA 156596 >seq13 Length=451911 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||||||||| || || ||| || || || ||||| || || || | |||||| | Sbjct 17287 CGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA 17346 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || ||||||||| | || | || ||||| || || || || ||||| ||| Sbjct 17347 TCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGGATGCCCTCCTTG 17406 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| ||||| | || | ||||| ||| || || || || || || Sbjct 17407 TCCTGGATTTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATC 17466 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || | ||| || || || |||||||| || Sbjct 17467 GTCTTCCCTGTGAGGGTCTTGACGAAAATCTGCATCTT 17504 >seq4 Length=697727 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 29599 TTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATC 29658 || || || || || || || | ||| || ||| || || || ||||||||| | ||| Sbjct 592302 TTCTGGATATTGTAGTCTGCCAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 592243 Query 29659 AATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCT 29718 |||| ||||| || || ||||||||||| || || |||| || ||||||| | || Sbjct 592242 AATCGCTGCTGGTCAGGGGGAATACCCTCCTTATCCTGTATCTTGGATTTGACATTGTCG 592183 Query 29719 ACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAA 29777 | |||||||| || || || || || || || || || || ||||| || || || Sbjct 592182 ATTGTGTCAGAGGACTCGACCTCTAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAA 592124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385206852520830