Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq11 150 1e-30 seq37 96.9 3e-14 seq3 93.3 3e-13 >seq11 Length=468793 Score = 150 bits (166), Expect = 1e-30 Identities = 235/336 (70%), Gaps = 0/336 (0%) Strand=Plus/Plus Query 282148 ATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACC 282207 ||| ||||||||||| ||| ||| | |||| || |||||||||||||| ||||| Sbjct 68186 ATACTTTCTCTTGAAGTCTGTGACAAAGTGGTTTACGAGGCGATTATCAAAATCCTCACC 68245 Query 282208 TCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAA 282267 ||||| | || | || | || || | |||| || | ||| ||||||| || ||| Sbjct 68246 ACCCAAGTGGGTGTCACCAGCAGTGGCCTTCACTTCAAAGATTCCGTCTTCAATAGTCAA 68305 Query 282268 AAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTC 282327 |||| |||||| ||| || || || | ||||| || || ||||| || || Sbjct 68306 GAGAGACACATCAAAGGTACCTCCGCCAAGGTCAAAGATCAGCACATTGCGCTCGCCTTC 68365 Query 282328 TTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAA 282387 || || ||||| || ||||||| ||| |||||||| || |||||||| || | ||| Sbjct 68366 AGCCTTCTTGTCAAGGCCGTACGCAATAGCTGCAGCAGTGGGCTCATTAATGATACGCAA 68425 Query 282388 AACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAA 282447 | || | || ||||| | || || || || || ||||| | || || |||||||| Sbjct 68426 GATGTTGATTCCGGCAATGGTACCAGCGTCCTTGGTCGCTTGACGCTGCGAGTCGTTAAA 68485 Query 282448 ATATGCAGGAACAGTAATAACGGCATCTGTTACTTC 282483 ||||| |||||||| | || |||||| | | ||| Sbjct 68486 GTATGCTGGAACAGTGACTACAGCATCTTTAATTTC 68521 Score = 134 bits (148), Expect = 1e-25 Identities = 439/669 (66%), Gaps = 11/669 (2%) Strand=Plus/Plus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 |||||||||||||| | ||||||||| |||||||| ||||| || || | | || || Sbjct 67416 ATACCATTGGCATCAAGATCAAATGTAACTTCAATCTGAGGAACTCCGCGGGGCGCGGGA 67475 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 || || || | | ||| | |||| || || || |||||| | || ||| Sbjct 67476 GGAATGCCAGTAAGTTCGAATTTGCCCATCAAGTTGTTGTCCTTAGTGCGCTGGCGCTCA 67535 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAA-TACTCT 281619 |||||| | | ||| || || ||| || ||||||||| | || | ||| ||| Sbjct 67536 CCCTCGTACACTTGAATGAGGACGCCAGGCTGGTTATCTGAAAACGTCGAAAACGTCTCA 67595 Query 281620 GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGC 281679 | || ||| ||||| |||||||||| | ||| | || ||||| ||||||||||| Sbjct 67596 GTCTTCTTT-GTGGGAATGGTTGTGTTTCGAGGAATCAACTTTGTCATCATACCACCAGC 67654 Query 281680 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTT 281737 ||||| | || || || ||||| | || |||| || | || | |||| | || Sbjct 67655 AGTTTCAATGCCTAGTGAGAGAGGTGCAACGTCAAGAAGCAAGATTTCGTTTGTTGACTT 67714 Query 281738 TCAT-CAGTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTT 281795 || ||| | ||| ||||| ||||| || || | |||||| |||| || ||||| | Sbjct 67715 GGATGTAGTATCTCCAGACAAG-ATAGCAGCCTGTACAGCAGCGCCATTGGCTACAGCCT 67773 Query 281796 CATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTC 281855 | ||||| || | ||| | | |||| |||||||| | | || || | || Sbjct 67774 CGTCAGGGTTGATGCTTTTGCTGGGCGTTTTGCCATTGAAGTAGTCGCTAATGAGAT-TC 67832 Query 281856 T-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTA 281914 | || |||||| |||| || ||||| |||| ||||| || || || || || || Sbjct 67833 TGAACACGAGGAATCCGAGTAGAGCCTCCCACTAGAACAATGTCGTGGACTTGAGACTTG 67892 Query 281915 TCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCT 281974 || ||||| | || | || || || || | ||| || || |||| ||| Sbjct 67893 TCGAGTTTGGCGTCAGTGAGGACGCGATCCACAGGCTGGAGAGTAGATCGGAACAGATCT 67952 Query 281975 GAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAAC 282034 || ||||||||||| || | |||| | | || ||||| || |||||| Sbjct 67953 TGGCATAGTTCTTCGAAACGGGCACGGGTAATCGGTGCGGAGTAGTCAATGCCCTCGAAC 68012 Query 282035 AAAGAATCAACTTCAATCGTAGT-TTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTC 282093 || ||||||| |||| | || ||| || | || || || ||||| || || ||||| Sbjct 68013 AACGAATCAATCTCAACGTTTGTGTTGTGTTG-AGCGGAGAGGGCACGCTTCGCTCGTTC 68071 Query 282094 ACATGCTGT 282102 ||| || || Sbjct 68072 ACAGGCCGT 68080 >seq37 Length=257599 Score = 96.9 bits (106), Expect = 3e-14 Identities = 192/282 (68%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 281432 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 281491 || || ||||| ||||||||||||| || || | || ||||||||||| || || | Sbjct 183532 ACTTTGAGAATGCCATTGGCATCCAGCTCGAACGACACCTCAATTTGAGGAACACCGCGA 183473 Query 281492 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 281551 |||| || || || ||| | | || |||| || ||||| ||||| || |||| Sbjct 183472 GGAGCGGGGGGAATGCCTGTGAGCTCGAACTTTCCAAGGTTATTGTTATCCTTGGTGAGA 183413 Query 281552 TTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA 281611 |||||| |||||| | | |||||| || |||| || ||||| | | || | Sbjct 183412 GATCGTTCGCCCTCGTAGACCTGGATAAGGACCACAGGCTGGTTATCAGCAGCGGTAGAG 183353 Query 281612 AATACTCTGGAT-TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAAT 281670 || | ||||| | || | |||||| | ||||| | ||| | |||||||||| Sbjct 183352 AAGA-TCTGGCTCTTGCGAGTAGGAATAGGAGTGTTGCGGGGAATCAACTTGGTCATAAC 183294 Query 281671 ACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATC 281712 ||||||| || || | ||||||| ||||| ||||||| Sbjct 183293 TCCACCAGTGGTCTCAATGCCAAGAGTCAGAGGGTTGACATC 183252 >seq3 Length=769506 Score = 93.3 bits (102), Expect = 3e-13 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 || || ||||| ||| | ||||| || ||||||||||||||||||||| | || || || Sbjct 496596 GGCAAGGAAGGACGTCTAAGAGGCAACTTGATGGGAAAGCGTGTCGATTTCTCAGCCCGA 496537 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTATT 432407 || || || ||| |||| ||||| | | ||| | ||||||||||| || | | ||| Sbjct 496536 ACTGTCATCACTGGTGATGCTAATTTATCACTCCACGAAGTTGGTGTCCCACGAAGCATT 496477 Query 432408 GCGAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTG 432453 || | | || || | | ||||| |||||| | | ||||||| Sbjct 496476 GCCAGGACGCTCACGTATCCCGAAACAGTAACACCATACAATATTG 496431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740501278114380