Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq11 150 1e-30
seq37 96.9 3e-14
seq3 93.3 3e-13
>seq11
Length=468793
Score = 150 bits (166), Expect = 1e-30
Identities = 235/336 (70%), Gaps = 0/336 (0%)
Strand=Plus/Plus
Query 282148 ATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACC 282207
||| ||||||||||| ||| ||| | |||| || |||||||||||||| |||||
Sbjct 68186 ATACTTTCTCTTGAAGTCTGTGACAAAGTGGTTTACGAGGCGATTATCAAAATCCTCACC 68245
Query 282208 TCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAA 282267
||||| | || | || | || || | |||| || | ||| ||||||| || |||
Sbjct 68246 ACCCAAGTGGGTGTCACCAGCAGTGGCCTTCACTTCAAAGATTCCGTCTTCAATAGTCAA 68305
Query 282268 AAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTC 282327
|||| |||||| ||| || || || | ||||| || || ||||| || ||
Sbjct 68306 GAGAGACACATCAAAGGTACCTCCGCCAAGGTCAAAGATCAGCACATTGCGCTCGCCTTC 68365
Query 282328 TTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAA 282387
|| || ||||| || ||||||| ||| |||||||| || |||||||| || | |||
Sbjct 68366 AGCCTTCTTGTCAAGGCCGTACGCAATAGCTGCAGCAGTGGGCTCATTAATGATACGCAA 68425
Query 282388 AACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAA 282447
| || | || ||||| | || || || || || ||||| | || || ||||||||
Sbjct 68426 GATGTTGATTCCGGCAATGGTACCAGCGTCCTTGGTCGCTTGACGCTGCGAGTCGTTAAA 68485
Query 282448 ATATGCAGGAACAGTAATAACGGCATCTGTTACTTC 282483
||||| |||||||| | || |||||| | | |||
Sbjct 68486 GTATGCTGGAACAGTGACTACAGCATCTTTAATTTC 68521
Score = 134 bits (148), Expect = 1e-25
Identities = 439/669 (66%), Gaps = 11/669 (2%)
Strand=Plus/Plus
Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500
|||||||||||||| | ||||||||| |||||||| ||||| || || | | || ||
Sbjct 67416 ATACCATTGGCATCAAGATCAAATGTAACTTCAATCTGAGGAACTCCGCGGGGCGCGGGA 67475
Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560
|| || || | | ||| | |||| || || || |||||| | || |||
Sbjct 67476 GGAATGCCAGTAAGTTCGAATTTGCCCATCAAGTTGTTGTCCTTAGTGCGCTGGCGCTCA 67535
Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAA-TACTCT 281619
|||||| | | ||| || || ||| || ||||||||| | || | ||| |||
Sbjct 67536 CCCTCGTACACTTGAATGAGGACGCCAGGCTGGTTATCTGAAAACGTCGAAAACGTCTCA 67595
Query 281620 GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGC 281679
| || ||| ||||| |||||||||| | ||| | || ||||| |||||||||||
Sbjct 67596 GTCTTCTTT-GTGGGAATGGTTGTGTTTCGAGGAATCAACTTTGTCATCATACCACCAGC 67654
Query 281680 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTT 281737
||||| | || || || ||||| | || |||| || | || | |||| | ||
Sbjct 67655 AGTTTCAATGCCTAGTGAGAGAGGTGCAACGTCAAGAAGCAAGATTTCGTTTGTTGACTT 67714
Query 281738 TCAT-CAGTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTT 281795
|| ||| | ||| ||||| ||||| || || | |||||| |||| || ||||| |
Sbjct 67715 GGATGTAGTATCTCCAGACAAG-ATAGCAGCCTGTACAGCAGCGCCATTGGCTACAGCCT 67773
Query 281796 CATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTC 281855
| ||||| || | ||| | | |||| |||||||| | | || || | ||
Sbjct 67774 CGTCAGGGTTGATGCTTTTGCTGGGCGTTTTGCCATTGAAGTAGTCGCTAATGAGAT-TC 67832
Query 281856 T-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTA 281914
| || |||||| |||| || ||||| |||| ||||| || || || || || ||
Sbjct 67833 TGAACACGAGGAATCCGAGTAGAGCCTCCCACTAGAACAATGTCGTGGACTTGAGACTTG 67892
Query 281915 TCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCT 281974
|| ||||| | || | || || || || | ||| || || |||| |||
Sbjct 67893 TCGAGTTTGGCGTCAGTGAGGACGCGATCCACAGGCTGGAGAGTAGATCGGAACAGATCT 67952
Query 281975 GAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAAC 282034
|| ||||||||||| || | |||| | | || ||||| || ||||||
Sbjct 67953 TGGCATAGTTCTTCGAAACGGGCACGGGTAATCGGTGCGGAGTAGTCAATGCCCTCGAAC 68012
Query 282035 AAAGAATCAACTTCAATCGTAGT-TTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTC 282093
|| ||||||| |||| | || ||| || | || || || ||||| || || |||||
Sbjct 68013 AACGAATCAATCTCAACGTTTGTGTTGTGTTG-AGCGGAGAGGGCACGCTTCGCTCGTTC 68071
Query 282094 ACATGCTGT 282102
||| || ||
Sbjct 68072 ACAGGCCGT 68080
>seq37
Length=257599
Score = 96.9 bits (106), Expect = 3e-14
Identities = 192/282 (68%), Gaps = 2/282 (1%)
Strand=Plus/Minus
Query 281432 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 281491
|| || ||||| ||||||||||||| || || | || ||||||||||| || || |
Sbjct 183532 ACTTTGAGAATGCCATTGGCATCCAGCTCGAACGACACCTCAATTTGAGGAACACCGCGA 183473
Query 281492 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 281551
|||| || || || ||| | | || |||| || ||||| ||||| || ||||
Sbjct 183472 GGAGCGGGGGGAATGCCTGTGAGCTCGAACTTTCCAAGGTTATTGTTATCCTTGGTGAGA 183413
Query 281552 TTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA 281611
|||||| |||||| | | |||||| || |||| || ||||| | | || |
Sbjct 183412 GATCGTTCGCCCTCGTAGACCTGGATAAGGACCACAGGCTGGTTATCAGCAGCGGTAGAG 183353
Query 281612 AATACTCTGGAT-TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAAT 281670
|| | ||||| | || | |||||| | ||||| | ||| | ||||||||||
Sbjct 183352 AAGA-TCTGGCTCTTGCGAGTAGGAATAGGAGTGTTGCGGGGAATCAACTTGGTCATAAC 183294
Query 281671 ACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATC 281712
||||||| || || | ||||||| ||||| |||||||
Sbjct 183293 TCCACCAGTGGTCTCAATGCCAAGAGTCAGAGGGTTGACATC 183252
>seq3
Length=769506
Score = 93.3 bits (102), Expect = 3e-13
Identities = 120/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347
|| || ||||| ||| | ||||| || ||||||||||||||||||||| | || || ||
Sbjct 496596 GGCAAGGAAGGACGTCTAAGAGGCAACTTGATGGGAAAGCGTGTCGATTTCTCAGCCCGA 496537
Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTATT 432407
|| || || ||| |||| ||||| | | ||| | ||||||||||| || | | |||
Sbjct 496536 ACTGTCATCACTGGTGATGCTAATTTATCACTCCACGAAGTTGGTGTCCCACGAAGCATT 496477
Query 432408 GCGAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTG 432453
|| | | || || | | ||||| |||||| | | |||||||
Sbjct 496476 GCCAGGACGCTCACGTATCCCGAAACAGTAACACCATACAATATTG 496431
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740501278114380
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |