Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq96 105 2e-17 seq5 91.5 3e-13 >seq96 Length=87723 Score = 105 bits (116), Expect = 2e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 131864 GTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGG 131923 || ||||||||| || |||||||| ||||| |||||||| | ||||||| ||| Sbjct 52415 GTTGCTTTTGCTGCCGTGGAAGGTATTTTCTTCAGCGGTGCTTTTGCTTCTATCTTCTGG 52356 Query 131924 CTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGAT 131983 || ||||||||||| |||||||| || ||| | || ||||| |||| |||||| | ||| Sbjct 52355 CTGAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAATTAATCTCGCGTGAT 52296 Query 131984 GAAGCATTGCATACTGAATTTGC 132006 || | |||| || || ||||| Sbjct 52295 GAGGGTCTGCACACAGACTTTGC 52273 >seq5 Length=693879 Score = 91.5 bits (100), Expect = 3e-13 Identities = 217/322 (67%), Gaps = 7/322 (2%) Strand=Plus/Minus Query 110689 TTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGA--- 110745 |||| ||| | | || |||||| |||| || | |||||| | || ||||| || | Sbjct 203761 TTCCCATGCTTCGTGTTTTCAACAACACGGCCAGATATGTCGACCAGGGTGGCAACAAGC 203702 Query 110746 GAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAG 110805 || |||| | ||||| || || | || |||||||| | ||| | ||||| ||| | | Sbjct 203701 GACCTGGCGCTTTTGCCATTTACTTGGAGCCTTGGCACGCCGATGTGTTTGAGTTCCTTG 203642 Query 110806 AACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGT 110865 | | || || ||||| || |||||| | || ||||||||||| ||| | | Sbjct 203641 ATTTGCGAAAGAATCACGGCAAGGAAGAAGTCCGTGCTCGTGATTTATTCCTTGCTCTTT 203582 Query 110866 GGATTTCAGATTTATTCATGAAACGTGTTCAAGAA-AATGGCATGTGGTCTCTTATGTGT 110924 ||||| | ||| | |||||||| || | || |||| || || ||| |||| ||||| Sbjct 203581 GGATTCCCGATCTTTTCATGAAGCGCG-TCGAGAAGAACGGTGATTGGACTCTGATGTG- 203524 Query 110925 CCTCATCG-TTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGA 110983 || || || | || || || |||| || || | |||||||| | || || || Sbjct 203523 CCCCAACGAATGCCCCGGCCTGGCTGACTGCTACGGCGAGGAGTTTGAGGCTCTCTATGA 203464 Query 110984 AAAATATGAAAAAGAAGGCAAG 111005 ||| ||||| || |||||| Sbjct 203463 AAAGTATGAGCGTGAGGGCAAG 203442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186772808117430