Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq5 154 2e-31
seq96 141 1e-27
seq22 91.5 2e-12
>seq5
Length=693879
Score = 154 bits (170), Expect = 2e-31
Identities = 339/504 (67%), Gaps = 17/504 (3%)
Strand=Plus/Minus
Query 259680 AGCACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACT 259739
|||||| ||||| |||||| | ||||| | | | | |||| || ||| |||||
Sbjct 204202 AGCACAGGGAGGAGCTCGACTCCGCCATTGTCTATGACAGAGATTTCAACTATCAGTACT 204143
Query 259740 TTGGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGC 259799
|||| | ||| ||| ||||| || || ||| | || | | |||||||
Sbjct 204142 TTGGCTTCAAGACTTTGGAGCGGTCATATCTTCTCAAGCTCAACGGCAAGATTGTCGAGC 204083
Query 259800 GGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACA 259859
| |||||| | ||| | ||||||||||| | || | |||| || ||||
Sbjct 204082 GACCCCAGCACATGATTATGCGTGTCGCTGTCGGGA--TCTGGG------GA----GACA 204035
Query 259860 ATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGT-TGTTCACCTCA 259918
|| | |||| || || | |||||| | |||||| ||||| | |||||
Sbjct 204034 ATA---TTGAGCGAGTCCTGGAAACCTACCATCTCATGTC-CAGCAAACTCTTCACACAC 203979
Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978
|| | ||||| || || || || ||||| || | ||| ||||| ||||| ||
Sbjct 203978 GCCTCACCCACACTATTCAACGCTGGCACACCTCAATGTCAGCTGTCGTCTTGCTTCCTC 203919
Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038
| |||||||||| || ||||||||||||||||||||||||||| ||||| |
Sbjct 203918 GTCGACATGAAGGAGGACAGCATCGAGGGCATCTATGACACGCTCAAGACCTGCGCCATG 203859
Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCC 260098
||||||||| ||| || || ||||| || | ||| | |||||| | ||| ||
Sbjct 203858 ATCTCCAAGATGGCTGGTGGTATCGGCTTGAATGTCCACCGCATTCGCGCCACTGGCTCC 203799
Query 260099 TACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAAC 260158
||| | || ||||||||||| |||||| || | | ||||||||||| ||||| |||
Sbjct 203798 TACATTGCCGGCACCAACGGGACGTCCAATGGTGTCATTCCCATGCTTCGTGTTTTCAAC 203739
Query 260159 GACACGGCGCGCTACGTCGACCAG 260182
||||||| | || |||||||||
Sbjct 203738 AACACGGCCAGATATGTCGACCAG 203715
>seq96
Length=87723
Score = 141 bits (156), Expect = 1e-27
Identities = 214/297 (72%), Gaps = 7/297 (2%)
Strand=Plus/Minus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| |||||||| |||||||||||||| || || ||||| ||||| ||| |||| |
Sbjct 52884 GATCTGGCAAATGTAC-AAAAAGGCCGAGGCTTCTTTCTGGACGGCCGAAGAGATCGATC 52826
Query 1455835 TCGGCGCC-GACACGGTCCACTGGGTG--TCG-CTGAGCGACGACGAGCGCCATTTCATC 1455890
| | || || | | ||||| ||| |||| ||||| ||| ||||||||
Sbjct 52825 T-GTCGAAAGATTTGCACGACTGGAACAATCGTCTGAATGACGATGAGAAATATTTCATC 52767
Query 1455891 AAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGG 1455950
||| | || || || ||| || ||| || ||||| || ||||||| ||| |
Sbjct 52766 TCCCACATTCTGGCATTCTTT-GCTGCCTCTGACGGCATTGTCAACGAGAACTTGGTTGA 52708
Query 1455951 CCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGC 1456010
||||| | || |||||| | || ||||| |||| |||||||| |||||||||
Sbjct 52707 GCGCTTCAGCGGCGAAGTCCAAGTCCCTGAGGCTCGTTGCTTTTACGGATTCCAGATCAT 52648
Query 1456011 CATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067
|| || || |||||||| ||||| ||||| ||| | |||||||||||| |||||||
Sbjct 52647 GATGGAGAATATCCACTCGGAAACATACTCTCTCTTAATCGACACCTACATCAAGGA 52591
>seq22
Length=330839
Score = 91.5 bits (100), Expect = 2e-12
Identities = 126/174 (72%), Gaps = 2/174 (1%)
Strand=Plus/Plus
Query 332874 AGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAGG 332933
|||| || |||||||| || ||| |||| |||||| | | | |||| ||||||||
Sbjct 175829 AGCGAAGAATGGCACATCGCGACTGAAGGGGCTCGATAATCTTGTTCGACTGGTTGCAGG 175888
Query 332934 CCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGT-CGACCGGAGGGCCTGTTGG 332992
| | ||||| || || || |||| || | ||||| || |||| | || || |||||
Sbjct 175889 CAAATGCAAATCGAGTTGTGTTGGAATAAATCTCCATAGTTCGAC-GAAGTGCTTGTTGC 175947
Query 332993 GCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCG 333046
|| | | ||| | || ||| || ||||||||||| |||| |||||| || |||
Sbjct 175948 GCACCGGACGTCATGCTGTCTGCTTCGTCGAGGATAATGAGCTTGTGTCGGCCG 176001
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177557531666060
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |