Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15]
2,630 sequences; 29,374,555 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq20 136 4e-27
seq13 125 7e-24
seq5 89.7 5e-13
>seq20
Length=366416
Score = 136 bits (150), Expect = 4e-27
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558
|||||||| | ||| | || || ||||| |||||||||||||| ||| || |
Sbjct 156161 CGCAACACCAAGTGCAAGGTTGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTCCGTCCA 156220
Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618
|| || |||||||| || || || || | ||||||||| ||||| || |||||||||||
Sbjct 156221 TCCTCAAGCTGTTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCTTCTTTG 156280
Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678
|||||||| ||| || || ||| | |||||| || |||||||| || || || |||
Sbjct 156281 TCTTGAATCTTTGACTTCACGTTGTCTATTGTGTCAGAAGATTCCACCTCAAGGGTGATG 156340
Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || || || | || || ||||| || |||||
Sbjct 156341 GTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 156375
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | ||| || || || || |||||||| || ||||||||||| |
Sbjct 156667 CCACCACGGAGGCGGAGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCTGCG 156726
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| |||| | ||| || ||||| || || |||||||||| |||||| || || || ||
Sbjct 156727 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGTCAGGAGGA 156786
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || || ||||| || ||||| ||| | ||||| || || || ||
Sbjct 156787 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCAGATGACTCGACC 156846
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| ||||| ||||| || ||||| | ||||| |||||||| |||||
Sbjct 156847 TCAAGAGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATCTGCAT 156893
>seq13
Length=451911
Score = 125 bits (138), Expect = 7e-24
Identities = 161/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| |||| ||| | ||| || ||| ||||| || |||||||||||| | | |||| |
Sbjct 17284 AGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 17343
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
|| |||||||| ||||| ||||| || | |||||||| || || || ||||| ||
Sbjct 17344 CCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGGATGCCCTCC 17403
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || || ||||| ||||| ||| | |||||||| || ||||| ||||| ||
Sbjct 17404 TTGTCCTGGATTTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTG 17463
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717
|| || || || || | || || |||||||| ||||| |||
Sbjct 17464 ATCGTCTTCCCTGTGAGGGTCTTGACGAAAATCTGCATCTTG 17505
>seq5
Length=693879
Score = 89.7 bits (98), Expect = 5e-13
Identities = 279/427 (65%), Gaps = 19/427 (4%)
Strand=Plus/Minus
Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623
|| |||||| | |||| || || || || || || || | ||||| | | ||
Sbjct 204077 CAGCACATGATTATGCGTGTCGCTGTCGGGATCTGGGGAGACAATATTGAGCGAGTCCTG 204018
Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683
||||| ||||| | ||||| |||| || || ||||| || ||||| | || |
Sbjct 204017 GAAACCTACCATCTCATGTCCAGCAAACTCTTCACACACGCCTCACCCACACTATTCAAC 203958
Query 7684 GCGGGCACAAACGCGCCTCAAT------TGTCCTCGTGTTTTTTGCTAACCATGCGCGAA 7737
|| |||||| ||||||| |||| || || || | | |||| ||
Sbjct 203957 GCTGGCACA------CCTCAATGTCAGCTGTCGTCTTGCTTCCTCGTCGACATGAAGGAG 203904
Query 7738 GACAGCATCGACGGCATTTACAACACGCTGCGCGA-TTGCGCCAATATTTCCAAATACGG 7796
||||||||||| ||||| || ||||||| | || ||||||| || ||| || | ||
Sbjct 203903 GACAGCATCGAGGGCATCTATGACACGCT-CAAGACCTGCGCCATGATCTCC-AAGATGG 203846
Query 7797 C-GGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCA 7855
| || || || || |||| || || | | ||||||| || | ||| | ||
Sbjct 203845 CTGGTGGTATCGGCTTGAATGTCCACCGCATTCGCGCCACTGGCTCCTACATTGCCGGCA 203786
Query 7856 CCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGAC 7915
||||||| | ||| ||| | |||||| | || || ||||| ||| ||| ||
Sbjct 203785 CCAACGGGACGTCCAATGGTGTCATTCCCATGCTTCGTGTTTTCAACAACACGGCCAGAT 203726
Query 7916 ATGTAGACCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGC 7972
|||| |||||||| || ||||| ||||| |||||| || |||||||| ||||
Sbjct 203725 ATGTCGACCAGGGTGGCAACAAGCGACCTGGCGCTTTTGCCATTTACTTGGAGCCTTGGC 203666
Query 7973 ACGCGGA 7979
|||| ||
Sbjct 203665 ACGCCGA 203659
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505381785027600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |