Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atkinsonella_20texensis_20[genbank_20GCA_5F001008035.1_202015-05-15] 2,630 sequences; 29,374,555 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq20 136 4e-27 seq13 125 7e-24 seq5 89.7 5e-13 >seq20 Length=366416 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 |||||||| | ||| | || || ||||| |||||||||||||| ||| || | Sbjct 156161 CGCAACACCAAGTGCAAGGTTGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTCCGTCCA 156220 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || |||||||| || || || || | ||||||||| ||||| || ||||||||||| Sbjct 156221 TCCTCAAGCTGTTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCTTCTTTG 156280 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 |||||||| ||| || || ||| | |||||| || |||||||| || || || ||| Sbjct 156281 TCTTGAATCTTTGACTTCACGTTGTCTATTGTGTCAGAAGATTCCACCTCAAGGGTGATG 156340 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || | || || ||||| || ||||| Sbjct 156341 GTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 156375 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| || || || || |||||||| || ||||||||||| | Sbjct 156667 CCACCACGGAGGCGGAGCACAAGATGGAGAGTTGATTCCTTCTGGATGTTGTAGTCTGCG 156726 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| || || |||||||||| |||||| || || || || Sbjct 156727 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAAATCAGACGCTGTTGGTCAGGAGGA 156786 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| || ||||| ||| | ||||| || || || || Sbjct 156787 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCAGATGACTCGACC 156846 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| ||||| || ||||| | ||||| |||||||| ||||| Sbjct 156847 TCAAGAGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAAATCTGCAT 156893 >seq13 Length=451911 Score = 125 bits (138), Expect = 7e-24 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| | ||| || ||| ||||| || |||||||||||| | | |||| | Sbjct 17284 AGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 17343 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| ||||| ||||| || | |||||||| || || || ||||| || Sbjct 17344 CCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGGATGCCCTCC 17403 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || ||||| ||||| ||| | |||||||| || ||||| ||||| || Sbjct 17404 TTGTCCTGGATTTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTG 17463 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || || || | || || |||||||| ||||| ||| Sbjct 17464 ATCGTCTTCCCTGTGAGGGTCTTGACGAAAATCTGCATCTTG 17505 >seq5 Length=693879 Score = 89.7 bits (98), Expect = 5e-13 Identities = 279/427 (65%), Gaps = 19/427 (4%) Strand=Plus/Minus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || |||||| | |||| || || || || || || || | ||||| | | || Sbjct 204077 CAGCACATGATTATGCGTGTCGCTGTCGGGATCTGGGGAGACAATATTGAGCGAGTCCTG 204018 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 ||||| ||||| | ||||| |||| || || ||||| || ||||| | || | Sbjct 204017 GAAACCTACCATCTCATGTCCAGCAAACTCTTCACACACGCCTCACCCACACTATTCAAC 203958 Query 7684 GCGGGCACAAACGCGCCTCAAT------TGTCCTCGTGTTTTTTGCTAACCATGCGCGAA 7737 || |||||| ||||||| |||| || || || | | |||| || Sbjct 203957 GCTGGCACA------CCTCAATGTCAGCTGTCGTCTTGCTTCCTCGTCGACATGAAGGAG 203904 Query 7738 GACAGCATCGACGGCATTTACAACACGCTGCGCGA-TTGCGCCAATATTTCCAAATACGG 7796 ||||||||||| ||||| || ||||||| | || ||||||| || ||| || | || Sbjct 203903 GACAGCATCGAGGGCATCTATGACACGCT-CAAGACCTGCGCCATGATCTCC-AAGATGG 203846 Query 7797 C-GGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCA 7855 | || || || || |||| || || | | ||||||| || | ||| | || Sbjct 203845 CTGGTGGTATCGGCTTGAATGTCCACCGCATTCGCGCCACTGGCTCCTACATTGCCGGCA 203786 Query 7856 CCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGAC 7915 ||||||| | ||| ||| | |||||| | || || ||||| ||| ||| || Sbjct 203785 CCAACGGGACGTCCAATGGTGTCATTCCCATGCTTCGTGTTTTCAACAACACGGCCAGAT 203726 Query 7916 ATGTAGACCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGC 7972 |||| |||||||| || ||||| ||||| |||||| || |||||||| |||| Sbjct 203725 ATGTCGACCAGGGTGGCAACAAGCGACCTGGCGCTTTTGCCATTTACTTGGAGCCTTGGC 203666 Query 7973 ACGCGGA 7979 |||| || Sbjct 203665 ACGCCGA 203659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505381785027600